PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g260070.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 706aa MW: 78198.3 Da PI: 7.308

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g260070.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.6	1.9e-10	36	87	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 +W t+E++ll++av+++G+ +W+++a ++ +t+ ck ++++++ Pd.00g260070.m01 36 SWGTWEELLLACAVHRFGTQSWDAVATELSkrssnlHLLTPHACKRKFHDLR 87 7*****************************9999997799999999999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence
MNVESVVAEG SCDNGLSDYM IFLMDKPNFP EKQTPSWGTW EELLLACAVH RFGTQSWDAV 60 ATELSKRSSN LHLLTPHACK RKFHDLRRRF SQNDSASGKD DDTPPTPWLD QLRQRRLDEL 120 RRELQRYDHS IVSLQLKVER LTEVREQSLR ETEKPVEKSD LEKTGEEEIE HKDAEPEDSS 180 PEKKGSSGEV SEHDDRSCNE SNTTDPKHEI PETEVADADK GSGQTEPAGE EIEPVEKLDN 240 PVVEDSCNGS SDSVVKETAV VEAEKGNSGE LKESVAESKG REEEEGTKVS PSNSEVQSSA 300 SLSRKLGQEP KPGGPGGPDR PEEPSEPDQE DESPAMKGVP VESQPLVEFL GILRSHKFAS 360 FFERRLHSQE TPIFKNMIRQ HVDFELVQTR LEGGRYEPCS RFLFFRDLLL ICNNAIVFFG 420 KKSPEYKAAC ELQLLVSKDM VLQAPKQDPP PKEETPKLPA PPLNQDPETS DSLLAKSKLS 480 LPLNACRKRS SITARASTTS SSGPDRKKEQ ITTSFSDVKP AVSWKQKEES SDEVEKLHVT 540 KKRRKERLRS SSRNNSSKNG RSRCNTNNDR NSEANDGFSS RVVTSNENSE SKAETEKKSN 600 TNSSGKKRSA ADFLSRMKRS STSKTGLSAE TSKTPDNNSK GGRAEQRKNG NGKGNAQKDQ 660 GSRRGSGGRQ AAKEQGSPTK RSVGRPSKRA AAPATAGPAK RTRQRG

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence

MNVESVVAEG SCDNGLSDYM IFLMDKPNFP EKQTPSWGTW EELLLACAVH RFGTQSWDAV  60
ATELSKRSSN LHLLTPHACK RKFHDLRRRF SQNDSASGKD DDTPPTPWLD QLRQRRLDEL  120
RRELQRYDHS IVSLQLKVER LTEVREQSLR ETEKPVEKSD LEKTGEEEIE HKDAEPEDSS  180
PEKKGSSGEV SEHDDRSCNE SNTTDPKHEI PETEVADADK GSGQTEPAGE EIEPVEKLDN  240
PVVEDSCNGS SDSVVKETAV VEAEKGNSGE LKESVAESKG REEEEGTKVS PSNSEVQSSA  300
SLSRKLGQEP KPGGPGGPDR PEEPSEPDQE DESPAMKGVP VESQPLVEFL GILRSHKFAS  360
FFERRLHSQE TPIFKNMIRQ HVDFELVQTR LEGGRYEPCS RFLFFRDLLL ICNNAIVFFG  420
KKSPEYKAAC ELQLLVSKDM VLQAPKQDPP PKEETPKLPA PPLNQDPETS DSLLAKSKLS  480
LPLNACRKRS SITARASTTS SSGPDRKKEQ ITTSFSDVKP AVSWKQKEES SDEVEKLHVT  540
KKRRKERLRS SSRNNSSKNG RSRCNTNNDR NSEANDGFSS RVVTSNENSE SKAETEKKSN  600
TNSSGKKRSA ADFLSRMKRS STSKTGLSAE TSKTPDNNSK GGRAEQRKNG NGKGNAQKDQ  660
GSRRGSGGRQ AAKEQGSPTK RSVGRPSKRA AAPATAGPAK RTRQRG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	541	545	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	4e-73	MYB_related family protein