PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g256830.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 239aa    MW: 26527.5 Da    PI: 6.8893
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g256830.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-161462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++eEd  l+++ + +G+g +W + + + g++R++k+c++rw++yl
  Pd.00g256830.m01 14 RGPWSPEEDTTLKNYLHNHGTGgNWISLPTKAGLNRCGKSCRLRWLNYL 62
                      89*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MGRAPCCDKS KVKRGPWSPE EDTTLKNYLH NHGTGGNWIS LPTKAGLNRC GKSCRLRWLN  60
YLRPDIKRGG FTEEEDNLIC TVYASQLPGR TDNDVKNYWN TKLKKKFFAA NNMKLASREF  120
PASVPKFEFG TPQDHGTSSS CFDGTLPYLM DVSLGQSFDQ QKQISQFPHS NFLEVNDFGT  180
CGSRSFTNIS SSQEASSLPT SSILGLENNY TPWSGDESGA LTDYGFEPPA DALLGNFGY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.19e-61MYB family protein