PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g241680.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 639aa MW: 70713.6 Da PI: 7.2938

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g241680.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.8e-08	131	150	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C +G +CkF H Pd.00g241680.m01 131 ICDFFAK-GWCIRGTSCKFVH 150 6****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence
MDISDSPVQA RDHHNDVRQD YKPEGLNGIH SNESHDDGKA YLRHSEVMDA KASNSSGVAG 60 EEMADAILMR DHLGKEVKSV MNPEDEMKQG DIHPRNDRKQ MDSRSAASEK VTRIMSPVAE 120 TSDRNKRPAI ICDFFAKGWC IRGTSCKFVH IKDSPNSTHP QGDVAAANCT REVQPDEGLR 180 DITERSRSPG FPDPLASSHL SSEKIRFSEH KGIQRRHQSL ENHKFPAVPG EESNLGKYSR 240 GNPTSQSSCM EEPAGIWSQR MHSDHNSPLV SLSLNSNSSN LLTNGSFPAS RISSWTGFSL 300 PSSYSCLDAS PHGTQKLLDR NRDYRYSTRS SPLLKSSSPF SSSELKKLPS TSVSLRSDKL 360 QTKMSSNDWE PSVPFRPSFI LPPAFLSSSG SQYDPLRDSI ELPKLANISL EASFYSEEAA 420 IGNKLHHQIH GESVSGTMRP VCDGDTNSMS SHNTCHEKVL DNSCYTREHN SPVTEAETVG 480 ASVVCQNGTM TIEENLSGPS HLKGSTKPHK TSSYGDSRPQ SDSSRHKKDI TVDRFRENNE 540 VDGELGTDGD VQQESKALRH FRAALVELVK ELLKPKWREG CLSKDAHNKI VKKAVEKVLS 600 AFQPQQIPPT VETVVQYLSS CRPKISKLVE GYVEKYGKS

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence

MDISDSPVQA RDHHNDVRQD YKPEGLNGIH SNESHDDGKA YLRHSEVMDA KASNSSGVAG  60
EEMADAILMR DHLGKEVKSV MNPEDEMKQG DIHPRNDRKQ MDSRSAASEK VTRIMSPVAE  120
TSDRNKRPAI ICDFFAKGWC IRGTSCKFVH IKDSPNSTHP QGDVAAANCT REVQPDEGLR  180
DITERSRSPG FPDPLASSHL SSEKIRFSEH KGIQRRHQSL ENHKFPAVPG EESNLGKYSR  240
GNPTSQSSCM EEPAGIWSQR MHSDHNSPLV SLSLNSNSSN LLTNGSFPAS RISSWTGFSL  300
PSSYSCLDAS PHGTQKLLDR NRDYRYSTRS SPLLKSSSPF SSSELKKLPS TSVSLRSDKL  360
QTKMSSNDWE PSVPFRPSFI LPPAFLSSSG SQYDPLRDSI ELPKLANISL EASFYSEEAA  420
IGNKLHHQIH GESVSGTMRP VCDGDTNSMS SHNTCHEKVL DNSCYTREHN SPVTEAETVG  480
ASVVCQNGTM TIEENLSGPS HLKGSTKPHK TSSYGDSRPQ SDSSRHKKDI TVDRFRENNE  540
VDGELGTDGD VQQESKALRH FRAALVELVK ELLKPKWREG CLSKDAHNKI VKKAVEKVLS  600
AFQPQQIPPT VETVVQYLSS CRPKISKLVE GYVEKYGKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-37	C3H family protein