PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g241270.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 323aa MW: 35613.4 Da PI: 8.2966 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.1 | 3.8e-30 | 16 | 93 | 1 | 77 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGav 77 aCaaC+++r+kC +dCv+apyf ae+ ++f++vhk+FG+sn +kllk+l++++ r +a++s ++eA+ + +dPv+G + Pd.00g241270.m01 16 ACAACRHQRKKCDDDCVMAPYFTAEKDEAFRAVHKIFGVSNTSKLLKKLEDKNhRGRAAESFIWEACTWKQDPVNGPL 93 7************************************************66655**********************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence |
MSMGSGNGGE LNSRHACAAC RHQRKKCDDD CVMAPYFTAE KDEAFRAVHK IFGVSNTSKL 60 LKKLEDKNHR GRAAESFIWE ACTWKQDPVN GPLVEQESIA LDQGSNNGSD MTYGYANQNL 120 APANGTYSSL LQGQEVTERK GLVDNNCVTG SNYQPAAISQ GGQQALGRGR QETQRVIGFG 180 PPLMPFDPTI QGGNGRPMRF QGQGRGIAGL DCATNSPMGP NIYGQIRGHV AFDPSQRQFG 240 QVGAAQIGPK FSEGFPAHMR AITQIQDAGF LPYHHHQPNH MQRQGMSQAQ NHRSFQQYSF 300 NNHQSYENGQ DVEHFNQVKS ERR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 4e-23 | LBD family protein |