PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g234280.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 33517.1 Da PI: 5.122 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed+ l+++++ +G g W+ +++ g++R++k+c++rw++yl Pd.00g234280.m01 14 KGAWSAWEDKALANYINTHGEGKWRDLPQRAGLNRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.7 | 1.2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE+el+v+++k+lG++ W++Ia +++ gRt++++k++w++ Pd.00g234280.m01 67 RGNISPEEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7899******************.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 298 aa Download sequence |
MGRKPCCDKE GLNKGAWSAW EDKALANYIN THGEGKWRDL PQRAGLNRCG KSCRLRWLNY 60 LRPDIKRGNI SPEEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRSEQGS 120 DKAHQDQRSA STSSKDDTKK SNNPASKSPV QVVRTKAFKC RKVAIPSHLD GHDQMLERSN 180 VAPGSDSESL CSSAVQEHDS SFGFLRDFDI NDMLIPDVLS SDFQQAQINN CDQDMLECGI 240 TKIEDLLMGE ARLGEWRADD DDQGDPIQPN DDDHGDVNGF NALSSFLNSV DDDQWIIS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-59 | MYB family protein |