PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g229850.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 666aa MW: 74435.3 Da PI: 9.5972

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g229850.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.4	5.7e-07	573	622	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Pd.00g229850.m01 573 RRPFSVPEVEALVQAVEKLGTGRWRDVKLRAFdgaKHRTYVDLKDKWKTL 622 567888899***************99888889***********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MVLQRRLDYG FNGYQVPEVP RASRSARGRG PIKKKLEANQ IRAFEILASV AAGKLLQESE 60 HPLPTNDSCG KDAHFIFDDT TKSKQEKGNL SKEDPCERGS CDEQTLLCVG RMQEMQECQQ 120 SYTLNGVSHS QENFSYEINR ASKSFDHSES IYSNKVFSDS PLSGDSVEEK PRGVLKRKLE 180 TGPSKDTSIE DERTQILGNS EDIMKVEGMP PELVSCGHDV KTSFSGDCKN HDPLLCHCAN 240 IKVDSRDDDE NCVRYAQPLS VVKEFEHPPD ASDEKINNLA ASRHWRVAPE RRIGGYSRND 300 GKIRQVYRHG RTCYTHQRSQ KIYPFKKRKF FNRMPLTTPD RGFNCESIFN SPDKRVNSDN 360 YCAEIGPSSS TTGGQVPFKS SDCNVKLSIK SFKVPDLFIE IPATATVGSL KRTVMEAVTS 420 ILGDGLHVGI LVRGKKVRDD NKTLLQTGIS QDEKSRNLGF MLEPKRAKLT YSPRSKDPSL 480 PSGRSRELTR HSASLVTQPG TSNVSPNPPV INFGGCVKRD LNAVPSLPST STEKTPQASQ 540 ALVAVPPISM NALAVVPFHR KSGHPEYVQR RIRRPFSVPE VEALVQAVEK LGTGRWRDVK 600 LRAFDGAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLAAH ACWCQRRAKQ 660 QVKAAV

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MVLQRRLDYG FNGYQVPEVP RASRSARGRG PIKKKLEANQ IRAFEILASV AAGKLLQESE  60
HPLPTNDSCG KDAHFIFDDT TKSKQEKGNL SKEDPCERGS CDEQTLLCVG RMQEMQECQQ  120
SYTLNGVSHS QENFSYEINR ASKSFDHSES IYSNKVFSDS PLSGDSVEEK PRGVLKRKLE  180
TGPSKDTSIE DERTQILGNS EDIMKVEGMP PELVSCGHDV KTSFSGDCKN HDPLLCHCAN  240
IKVDSRDDDE NCVRYAQPLS VVKEFEHPPD ASDEKINNLA ASRHWRVAPE RRIGGYSRND  300
GKIRQVYRHG RTCYTHQRSQ KIYPFKKRKF FNRMPLTTPD RGFNCESIFN SPDKRVNSDN  360
YCAEIGPSSS TTGGQVPFKS SDCNVKLSIK SFKVPDLFIE IPATATVGSL KRTVMEAVTS  420
ILGDGLHVGI LVRGKKVRDD NKTLLQTGIS QDEKSRNLGF MLEPKRAKLT YSPRSKDPSL  480
PSGRSRELTR HSASLVTQPG TSNVSPNPPV INFGGCVKRD LNAVPSLPST STEKTPQASQ  540
ALVAVPPISM NALAVVPFHR KSGHPEYVQR RIRRPFSVPE VEALVQAVEK LGTGRWRDVK  600
LRAFDGAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLAAH ACWCQRRAKQ  660
QVKAAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	329	QKIYPFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-110	MYB_related family protein