PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g224000.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 28894 Da    PI: 9.9206
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g224000.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ien   rqvtf+kRrng+lKKA+ELSvLCdaevavi+f+stg+lye+ss
  Pd.00g224000.m01  9 KKIENVNSRQVTFTKRRNGLLKKAKELSVLCDAEVAVIVFASTGRLYEFSS 59
                      68***********************************************96 PP
2K-box553.6e-1910018317100
             K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                        +++++ L++ei +L+    +++G++L+ Ls+keLqqLe+qL +++  +++kK+e+lle ++ ++  e+++ een++Lrk+lee
  Pd.00g224000.m01 100 PNRDVNGLQNEIATLRLACMRMMGKELHGLSYKELQQLEEQLREGVLFVKQKKEEILLETLKSSRLLEQRAMEENENLRKQLEE 183
                       5678999*********999**************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MGRGRIEIKK IENVNSRQVT FTKRRNGLLK KAKELSVLCD AEVAVIVFAS TGRLYEFSST  60
SMPHTLLRYK KGGVIDYPQE RSIEPATKEP NFVQKRKVEP NRDVNGLQNE IATLRLACMR  120
MMGKELHGLS YKELQQLEEQ LREGVLFVKQ KKEEILLETL KSSRLLEQRA MEENENLRKQ  180
LEEMRQTHKP NWQIVPASDH PLLESSKAVS SYEPDTYLHL GLSSSSDAHH QKRKAAKIER  240
NSNDSGSQVV SH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-54MIKC_MADS family protein