PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g221890.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | SBP | ||||||||
Protein Properties | Length: 339aa MW: 37699.1 Da PI: 10.9534 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132 | 2.1e-41 | 184 | 261 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh l efD++krsCrrrLa+hn+rrrk+q+ Pd.00g221890.m01 184 RCQAEGCTADLSHAKHYHRRHKVCEFHSKASTVIANGLTQRFCQQCSRFHLLPEFDNGKRSCRRRLADHNRRRRKTQQ 261 6**************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence |
MRKRVRIGRK VAADTTTISS FLSLKRPRRK GRPGKDPRDH YQNAGLRMGK PLHPSQASAF 60 NNLVPPPPPP QQQSHHAAFA HHFNSAQAQQ LHSIYDAHAY ASASAYAPPN HHPLLSLDPI 120 HGGAAHGLIL VPKSEDLCRP VDFASRIGLN LGGRTYFSSE DDFMNRLYRR TRPATETGSN 180 HAPRCQAEGC TADLSHAKHY HRRHKVCEFH SKASTVIANG LTQRFCQQCS RFHLLPEFDN 240 GKRSCRRRLA DHNRRRRKTQ QTNQENHNSQ VQQLVENARN SSSDNVARSP PESAAHSASS 300 VTVALSPPRM TLDCFRQRPY QAAATTSSGS SSSLFFSSG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 30 | RPRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 6e-56 | SBP family protein |