PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g209790.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 924aa MW: 104371 Da PI: 8.1599

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g209790.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.3e-17	754	808	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Pd.00g209790.m01 754 RKKLRLTKEQSLLLEDTFKEHNTLNPRQKQALAKQLNLRPRQVEVWFQNRRARTK 808 788899***********************************************98 PP
2	HD-ZIP_I/II	121.3	4.8e-39	754	843	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+ lLE++F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+e+n+rL+kev+eLr +l Pd.00g209790.m01 754 RKKLRLTKEQSLLLEDTFKEHNTLNPRQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCEKLTEDNRRLQKEVQELR-AL 843 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 924 aa Download sequence
MNKPVIPTPP DSYFFKRDAL PPISLKRCAL SQPDEESLRT SKARSLPDHD SITANSYGLE 60 VASSQVRSNW NRGRGRARGA RGRGRRAKGR RGSTGDDGYA PYDLSLSNFK EVRVEFVEKL 120 SMVDGVSIPQ MSEPNVAVEI LDSNKNLIDT IVKNRDDGTH YRISWFYGPP YREEKSLFWA 180 SLTNFALTNS PHWLCIGDLN EILGNDEKEG GNPWPWCRTR FLRSFMDSNG LLDLRTTGQF 240 FTWENRQDLD SLVRIKLDRG LINDMWLYKW PDSCVHVEPR IGSDHSPLVL FFTPRVRRRR 300 KDFKFEAYWA DDPECDSVIQ RGWNVCLHGD SVSNLSANLG ACRYDLQKWS KGKFPNNSSR 360 INYLMKDLAT LQFGEHGENF RHQEAAIWNE LSGLWSREEM YWKQRSRVNW LTAGDANTKF 420 FHLSTLHRRQ RNRIESLLDS EGDCICGDLA VRDEFGSFFG SIFSSCGPRN WGNILQCVHK 480 KITDAHNRSL TAPFSVDEVR TAVKQLGSLK APGPDGFPGL FYDRFWEVVQ GSINDLVTEF 540 FSGNCSLDQL NHTHIVLIPK ARCQALFNDL KPSPLMVLSH ATSRLEEFSQ ARDSTTGFPP 600 STGGAPPSGF LALFGSFGKG ERRKKMGEKD DGLELGLSLS LGCKPNENES SLHLNLMEKP 660 SQPMQNHQHR TSWNEIFQFP DRNPDARSCL RGIDVNQAAE FEEENGVSSP NSTVSSLSGK 720 RSEREPIGDE NEAERTSCSH GSDDEDGNGG DLSRKKLRLT KEQSLLLEDT FKEHNTLNPR 780 QKQALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCELLK RCCEKLTEDN RRLQKEVQEL 840 RALKLSPQLY MQMSPPTTLT MCPSCERVAV SSLSSSAAAA ASSTAPANGQ TCQSGAPNVQ 900 RPIPISPWAT LPIQRRPLDA SAPK

Sequence ? help Back to Top

Protein Sequence Length: 924 aa Download sequence

MNKPVIPTPP DSYFFKRDAL PPISLKRCAL SQPDEESLRT SKARSLPDHD SITANSYGLE  60
VASSQVRSNW NRGRGRARGA RGRGRRAKGR RGSTGDDGYA PYDLSLSNFK EVRVEFVEKL  120
SMVDGVSIPQ MSEPNVAVEI LDSNKNLIDT IVKNRDDGTH YRISWFYGPP YREEKSLFWA  180
SLTNFALTNS PHWLCIGDLN EILGNDEKEG GNPWPWCRTR FLRSFMDSNG LLDLRTTGQF  240
FTWENRQDLD SLVRIKLDRG LINDMWLYKW PDSCVHVEPR IGSDHSPLVL FFTPRVRRRR  300
KDFKFEAYWA DDPECDSVIQ RGWNVCLHGD SVSNLSANLG ACRYDLQKWS KGKFPNNSSR  360
INYLMKDLAT LQFGEHGENF RHQEAAIWNE LSGLWSREEM YWKQRSRVNW LTAGDANTKF  420
FHLSTLHRRQ RNRIESLLDS EGDCICGDLA VRDEFGSFFG SIFSSCGPRN WGNILQCVHK  480
KITDAHNRSL TAPFSVDEVR TAVKQLGSLK APGPDGFPGL FYDRFWEVVQ GSINDLVTEF  540
FSGNCSLDQL NHTHIVLIPK ARCQALFNDL KPSPLMVLSH ATSRLEEFSQ ARDSTTGFPP  600
STGGAPPSGF LALFGSFGKG ERRKKMGEKD DGLELGLSLS LGCKPNENES SLHLNLMEKP  660
SQPMQNHQHR TSWNEIFQFP DRNPDARSCL RGIDVNQAAE FEEENGVSSP NSTVSSLSGK  720
RSEREPIGDE NEAERTSCSH GSDDEDGNGG DLSRKKLRLT KEQSLLLEDT FKEHNTLNPR  780
QKQALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCELLK RCCEKLTEDN RRLQKEVQEL  840
RALKLSPQLY MQMSPPTTLT MCPSCERVAV SSLSSSAAAA ASSTAPANGQ TCQSGAPNVQ  900
RPIPISPWAT LPIQRRPLDA SAPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	297	302	RRRRKD
2	753	759	SRKKLRL
3	803	811	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	1e-83	HD-ZIP family protein