PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g188640.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 602aa MW: 68837.9 Da PI: 9.9104

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g188640.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.5e-18	376	420	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ Pd.00g188640.m01 376 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 420 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MQRGKCWPLL RVYVKRDSMI LKGSCFDNAR ELPGDILERF DNNISNIVNL RVKGWSSPAY 60 YLQKVLPKLE KMGAVRIAPF SNRLAHAVPS NVQRLRCLAN FEALRFSNSI RILADKMVDR 120 MIKSSSHSGG KYVSVHLRFE EDMVAFSCCE YDGGEEEKRE MDIARERGWR GKFRRRGRVI 180 RPGANRVDGK CPLTPLEVGM MLRGMGFDNT TSVYIAAGKI YRAEKYMAPL KQMFPRLEMK 240 DTLATAEELA PFQGHLSRLA ALDYTVCLHS EVFVTTQGGN FPHFLMGHRR YLYGGHSKTI 300 NPDKRKLALL FDNPSIRWED FKRQMQDMLR HSDQKGVELK KPSSSLYTFP MPDWLLRCGK 360 SCRLRWINYL RPDLKRGNFT EEEDELIIKL HSLLGNKWSL IAGRLPGRTD NEIKNYWNTH 420 IKRKLISRGL DPQTHRPLND TTTAAAAATT PASRLDFRNI SPPSAVVDKT TNKNSILHHK 480 TINKTSSNNN HHNNNIVLFK PKMEEDNIEE ASNHYMYKCS DLNLDLSIGL EPFQSEPTRA 540 SSGNSAESRL QQNNYQVFGT VQKAVVTQAV CLCCQVGFQS SEACRNCQCA NGFYRFHRPL 600 NS

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MQRGKCWPLL RVYVKRDSMI LKGSCFDNAR ELPGDILERF DNNISNIVNL RVKGWSSPAY  60
YLQKVLPKLE KMGAVRIAPF SNRLAHAVPS NVQRLRCLAN FEALRFSNSI RILADKMVDR  120
MIKSSSHSGG KYVSVHLRFE EDMVAFSCCE YDGGEEEKRE MDIARERGWR GKFRRRGRVI  180
RPGANRVDGK CPLTPLEVGM MLRGMGFDNT TSVYIAAGKI YRAEKYMAPL KQMFPRLEMK  240
DTLATAEELA PFQGHLSRLA ALDYTVCLHS EVFVTTQGGN FPHFLMGHRR YLYGGHSKTI  300
NPDKRKLALL FDNPSIRWED FKRQMQDMLR HSDQKGVELK KPSSSLYTFP MPDWLLRCGK  360
SCRLRWINYL RPDLKRGNFT EEEDELIIKL HSLLGNKWSL IAGRLPGRTD NEIKNYWNTH  420
IKRKLISRGL DPQTHRPLND TTTAAAAATT PASRLDFRNI SPPSAVVDKT TNKNSILHHK  480
TINKTSSNNN HHNNNIVLFK PKMEEDNIEE ASNHYMYKCS DLNLDLSIGL EPFQSEPTRA  540
SSGNSAESRL QQNNYQVFGT VQKAVVTQAV CLCCQVGFQS SEACRNCQCA NGFYRFHRPL  600
NS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	8e-58	MYB family protein