PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g139740.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 814aa MW: 91467.9 Da PI: 6.8926

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g139740.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	114.7	5.2e-36	135	210	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv++C+ad++e+k yhrrh+vC ++++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k Pd.00g139740.m01 135 RCQVPSCRADIKELKGYHRRHRVCLACANASTVFLDGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRK 210 6************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 814 aa Download sequence
MEGPASPSST QSQQQRLDEA RFSEMETQPP LPNQDTSTVW DWGDLLDFTV DDDLSISWGS 60 AEIDPAPALE DLPEDPNSGR VRKRDPRLAC TNFLAGHVPC ACPEIDERMM ELEEEEAGHG 120 KKRVKTARAP PGMARCQVPS CRADIKELKG YHRRHRVCLA CANASTVFLD GETKRYCQQC 180 GKFHVLSDFD EGKRSCRRKL ERHNNRRRRK PINSKGGIRK ESQREIQIED TNCDGGAGED 240 SIQLSSQLND KEELPESEGG RISTLSSVPD SQIVNSDGGA SLVASGETQM DGRKHDSNNS 300 LSPPNCDKSA YSSMCPTGRI SFKLYDWNPA EFPRRLRHQI FQWLASMPVE LEGYIRPGCI 360 ILTVFIAMPK FMWMKLLEDP VSYIHDFVVV PGRMLSGRGN ILVYLNDMIF RVVKDGTSVI 420 KGKVEMRAPR LHYVHPRYFE AGKPMEFVAC GSDLLQPKFR FLVSFSGKYL AYNYYPESSP 480 SQIEGDTATN LDHQLYKIRV PQTEANRFGP AFIEIENESG LSNFLPILIA DKEVCAEMNT 540 IQKRYEESFS LQGSHFSSSG SLSDSCEASS LRHTAFSEVI LDIAWLLKKP SSENFQQIMT 600 ASQIQRFNYL LNFLISIKST TILEKVSQNL KTLMDNMELH SANDGTSDAD MSLLKNYMDY 660 ARDRQKIDHS GVLVPRSGRL VQKEDIVSQS QSCFQNVGNL VVPLQCQDTE ITVDGRVDVM 720 VGSTSHERSE TVPLLSKKAV MKANLIKKWP RVANFCTSGE VSRSRSSGAF LRFRPVLYVI 780 CAAAICLGFC AVLFHPHKVG EFAVTIRRCL FDNF

Sequence ? help Back to Top

Protein Sequence Length: 814 aa Download sequence

MEGPASPSST QSQQQRLDEA RFSEMETQPP LPNQDTSTVW DWGDLLDFTV DDDLSISWGS  60
AEIDPAPALE DLPEDPNSGR VRKRDPRLAC TNFLAGHVPC ACPEIDERMM ELEEEEAGHG  120
KKRVKTARAP PGMARCQVPS CRADIKELKG YHRRHRVCLA CANASTVFLD GETKRYCQQC  180
GKFHVLSDFD EGKRSCRRKL ERHNNRRRRK PINSKGGIRK ESQREIQIED TNCDGGAGED  240
SIQLSSQLND KEELPESEGG RISTLSSVPD SQIVNSDGGA SLVASGETQM DGRKHDSNNS  300
LSPPNCDKSA YSSMCPTGRI SFKLYDWNPA EFPRRLRHQI FQWLASMPVE LEGYIRPGCI  360
ILTVFIAMPK FMWMKLLEDP VSYIHDFVVV PGRMLSGRGN ILVYLNDMIF RVVKDGTSVI  420
KGKVEMRAPR LHYVHPRYFE AGKPMEFVAC GSDLLQPKFR FLVSFSGKYL AYNYYPESSP  480
SQIEGDTATN LDHQLYKIRV PQTEANRFGP AFIEIENESG LSNFLPILIA DKEVCAEMNT  540
IQKRYEESFS LQGSHFSSSG SLSDSCEASS LRHTAFSEVI LDIAWLLKKP SSENFQQIMT  600
ASQIQRFNYL LNFLISIKST TILEKVSQNL KTLMDNMELH SANDGTSDAD MSLLKNYMDY  660
ARDRQKIDHS GVLVPRSGRL VQKEDIVSQS QSCFQNVGNL VVPLQCQDTE ITVDGRVDVM  720
VGSTSHERSE TVPLLSKKAV MKANLIKKWP RVANFCTSGE VSRSRSSGAF LRFRPVLYVI  780
CAAAICLGFC AVLFHPHKVG EFAVTIRRCL FDNF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	209	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	0.0	SBP family protein