PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1298510.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 410aa MW: 45263.4 Da PI: 10.1222

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1298510.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.1	7.1e-16	89	176	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea e+ +l+rg+lk+++W+ev++++ ++ ++ +qCk++++ ++k+yk +k + + + s++p+f++l+ Pd.00g1298510.m01 89 CWSEGATAVLIEAWGERYLELSRGNLKQKHWKEVADVVssreDYGKTPKTDIQCKNRIDTVKKKYKLEKSKMAAG--GGPSKWPFFERLD 176 7***********************************85444455566778****************997..67778****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MGFYVNSPEL RYIQNQQVPY VTYQAGCPKT PVTGTPSFHQ SRHATSITGS LIPRHIPAPA 60 SQPQSKGLTL ALPSQGQQGR SSGGGREDCW SEGATAVLIE AWGERYLELS RGNLKQKHWK 120 EVADVVSSRE DYGKTPKTDI QCKNRIDTVK KKYKLEKSKM AAGGGPSKWP FFERLDHLIG 180 PSSAAKVGPG SGGGGGFLAH NQKVPMGMPV GVRPGQYFGQ RDSKREVKTR PRSLVDWDSD 240 ESGELSPFSI DNEVFERKRR RRTVLPEANV NNAGGVGKGG VGTKDGGVVR EKGGGGWGSS 300 VRELTRAIMK FGEAYEHAET AKLQQVVEME KQRMKFAKEL ELQRMQFFMK TQVEISQLKH 360 GGGRRSGNAE DPIEAIEDLR EVELRLCIDN ELIRIVRIFG IWGLKVTSVI

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MGFYVNSPEL RYIQNQQVPY VTYQAGCPKT PVTGTPSFHQ SRHATSITGS LIPRHIPAPA  60
SQPQSKGLTL ALPSQGQQGR SSGGGREDCW SEGATAVLIE AWGERYLELS RGNLKQKHWK  120
EVADVVSSRE DYGKTPKTDI QCKNRIDTVK KKYKLEKSKM AAGGGPSKWP FFERLDHLIG  180
PSSAAKVGPG SGGGGGFLAH NQKVPMGMPV GVRPGQYFGQ RDSKREVKTR PRSLVDWDSD  240
ESGELSPFSI DNEVFERKRR RRTVLPEANV NNAGGVGKGG VGTKDGGVVR EKGGGGWGSS  300
VRELTRAIMK FGEAYEHAET AKLQQVVEME KQRMKFAKEL ELQRMQFFMK TQVEISQLKH  360
GGGRRSGNAE DPIEAIEDLR EVELRLCIDN ELIRIVRIFG IWGLKVTSVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	261	RKRRR
2	257	263	RKRRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	5e-53	Trihelix family protein