PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1289210.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 298aa    MW: 33096.8 Da    PI: 5.5695
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1289210.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.24.3e-2376119851
                        HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF   8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                         rqvtfskRr g++KKA ELSvLC+ evav+ifs t+kl++yss
  Pd.00g1289210.m01  76 ARQVTFSKRRRGLFKKAAELSVLCESEVAVVIFSATDKLFDYSS 119
                        69****************************************96 PP
2K-box52.22.7e-181472311599
              K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        +  ++++ kL ke+e+  r++R+++GedL+ L+l eL +Leq Le sl ++ ++K+el++++i  l kk  el e+n++Lr+k++
  Pd.00g1289210.m01 147 QLENENHIKLSKEVEEKSRQLRQMKGEDLKGLNLDELLKLEQLLEASLGRVIETKEELIMSEIMALEKKGAELAEANNQLRQKMQ 231
                        55667888**************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MLRFALSRYN INGGDCMHQR QGASVPVDLL SRQYLSNSLS FFGQAKTSDR AETPTREMVK  60
MMREKIKIKK IDYLPARQVT FSKRRRGLFK KAAELSVLCE SEVAVVIFSA TDKLFDYSSS  120
STKDVIERYK AHTGGVEKSD KQFLELQLEN ENHIKLSKEV EEKSRQLRQM KGEDLKGLNL  180
DELLKLEQLL EASLGRVIET KEELIMSEIM ALEKKGAELA EANNQLRQKM QMLSGGNTGP  240
AFVEPETLIT NVGGGGEEDG MSSESALIAT STSCNSAVSL SLEDDCSDVT LSLKLGLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-41MIKC_MADS family protein