PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1289100.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 619aa MW: 65700.8 Da PI: 6.1424

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1289100.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.8e-09	208	253	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 r++W++ Ed+ l+ +v+++G g+W+ I r Rt++q+ rw Pd.00g1289100.m01 208 RKKWSEAEDLELIAGVRRYGEGNWANILRGDFkGERTANQLSQRWK 253 789**********************98522359********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence
MVEKPKDPEK SYITEEDTVN LLHRYQGANV LQLLQEVAHS QDVKIDWNQL AEKTSTGISN 60 AREYQMLWRH LAYSEAFVDN FDNGTQPVDD DSDLEHELEA FPAVSGEDST EAAACVKVLM 120 ASGLPSDSTH RSGATVEAPL TINIPNGQPS RTHKNSQPPC SMQGMNITVP VSVQKQPLLA 180 MTTSTGATAE GGDANGSASN NMAPRKKRKK WSEAEDLELI AGVRRYGEGN WANILRGDFK 240 GERTANQLSQ RWKYIRKHHH QDLNVGGNSS NKLSEAQLAT RHAMSLALNM PSITANTIGT 300 AGTNTHSKFG GTNATTNSVP STAAEEELQS QQGLKPAKPY QMGLLGSTSK SQLTSKKTLT 360 KPNSNTDGMV RATAVAAGAR IASPSDAASL LKAAQAKNAV HVLPTGGSSI QSSLPGSMRT 420 HPEPHPNLHY MHTGLAAPPV STPLSTAVTP SATHPGSLKA LPQTSQHAPT NSTLLSKQIK 480 DVSCSLDSEP GCTPTQQVQD GAVISENGQN EGGQKDKVDS PDQKAELKNL STSAENLVGS 540 LDIKGDEADN IAGIGVQSEE RQSAKDNETL CSLKGDDPFA ADSCENQSAS EQQRGLVSIV 600 GDGCNGKQVL GKEETGIKI

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence

MVEKPKDPEK SYITEEDTVN LLHRYQGANV LQLLQEVAHS QDVKIDWNQL AEKTSTGISN  60
AREYQMLWRH LAYSEAFVDN FDNGTQPVDD DSDLEHELEA FPAVSGEDST EAAACVKVLM  120
ASGLPSDSTH RSGATVEAPL TINIPNGQPS RTHKNSQPPC SMQGMNITVP VSVQKQPLLA  180
MTTSTGATAE GGDANGSASN NMAPRKKRKK WSEAEDLELI AGVRRYGEGN WANILRGDFK  240
GERTANQLSQ RWKYIRKHHH QDLNVGGNSS NKLSEAQLAT RHAMSLALNM PSITANTIGT  300
AGTNTHSKFG GTNATTNSVP STAAEEELQS QQGLKPAKPY QMGLLGSTSK SQLTSKKTLT  360
KPNSNTDGMV RATAVAAGAR IASPSDAASL LKAAQAKNAV HVLPTGGSSI QSSLPGSMRT  420
HPEPHPNLHY MHTGLAAPPV STPLSTAVTP SATHPGSLKA LPQTSQHAPT NSTLLSKQIK  480
DVSCSLDSEP GCTPTQQVQD GAVISENGQN EGGQKDKVDS PDQKAELKNL STSAENLVGS  540
LDIKGDEADN IAGIGVQSEE RQSAKDNETL CSLKGDDPFA ADSCENQSAS EQQRGLVSIV  600
GDGCNGKQVL GKEETGIKI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	210	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	1e-85	MYB_related family protein