PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G09710.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 610aa    MW: 64692.5 Da    PI: 9.7289
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G09710.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.8e-09200244144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                      r+rW++eEde l  avk+ G g+W+ I +       Rt+ q+  rw
      AT1G09710.1 200 RKRWSAEEDEELFAAVKRCGEGNWAHIVKgdFR-GERTASQLSQRW 244
                      89************************9652134.478888887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.503195252IPR017930Myb domain
SuperFamilySSF466891.36E-11197250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-12197249IPR009057Homeodomain-like
SMARTSM007172.1E-9199250IPR001005SANT/Myb domain
PfamPF002492.6E-6200244IPR001005SANT/Myb domain
CDDcd116604.42E-14201249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MVANNNTSSN RRKRIITEGD IATLLLRYDM ETILRMLQEI SYCSETKMDW NALVKKTTTG  60
ITNAREYQLL WRHLSYRHPL LPVEDDALPL DDDSDMECEL EASPAVSHEA SVEAIAHVKV  120
MAASYVLSES DILDDSTVEA PLTINIPYAL PEGSQEPSES PWSSRGMNIN FPVCLQKVTS  180
TEGMNGNGSA GISMAFRRKR KRWSAEEDEE LFAAVKRCGE GNWAHIVKGD FRGERTASQL  240
SQRWALIRKR CHTSTSVSQC GLQGTEAKLA VNHALSLALG NRPPSNKLAI GLMPTTSSCT  300
ITETEANGGS SSQGQQQSKP IVQALPRAGT SLPAAKSRVV KKTTASSTSR SDLMVTANSV  360
AAAACMGDVL TAASGRKVEP GKTDAPRVPK TKPVKHASTV CMPQPSGSLS MPKVEPGTSV  420
AASIRSLANG KLKPVMASSS SNKPPLIAPR SEGSSMLSAS APLASLSRIV SNQRVFAGSV  480
PATEIVTCKP DGGQKGQARG NEASSSAAIQ PHQITSRNLE ISQGKQATQA QSPNLLPRKV  540
PVVRTAVHCA TNQKLMDKPS DQTVVPIRGA GSQSKAKGEV NSKVGPVIKV SSVCGKPLEV  600
ATVAGTGQGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201RRKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.449710.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT1G09710
AtGenExpressAT1G09710
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G09710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G09710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195460.0AY519546.1 Arabidopsis thaliana MYB transcription factor (At1g09710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001322896.10.0Homeodomain-like superfamily protein
RefseqNP_172442.30.0Homeodomain-like superfamily protein
TrEMBLQ6R0D20.0Q6R0D2_ARATH; Homeodomain-like superfamily protein
STRINGAT1G09710.20.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Yanhui C, et al.
    The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
    Plant Mol. Biol., 2006. 60(1): p. 107-24
    [PMID:16463103]
  2. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]