PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1287410.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 782aa MW: 88559.5 Da PI: 9.8189

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1287410.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58	2.1e-18	571	615	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ Pd.00g1287410.m01 571 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 615 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence
MHGYSRLGNP RAAGSPPSSP RCRHGRNKNA GGRGPKQSIV EKVVVLLISV VFKRRGVLLF 60 APLLYISGML LYMGSVSFDV VSLKNAVVVV SKRSPPGSLY RSPQVFQKLW PYMQAESNHT 120 HNFLMTVWNS KVHQVWKPCI SEDTPKEGTA LPKSNGLFII EANGGLNQQR LSICDAVAVA 180 GLLNATLLIP IFHLNSVWRD SSHFGNIFDE DFFIHALRNH VNVVRELPGD ILERFDNNIS 240 NIVNLRVKGW SSPAYYLQKV LPKLEKMGAV RIAPFSNRLA HAVPSNVQRL RCLANFEALR 300 FSNSIRILAD KMVDRMIKSS SHSGGKYVSV HLRFEEDMVA FSCCEYDGGE EEKREMDIAR 360 ERGWRGKFRR RGRVIRPGAN RVDGKCPLTP LEVGMMLRGM GFDNTTSVYI AAGKIYKAEK 420 YMAPLKQMFP RLEMKDTLAT AEELAPFQGH LSRLAALDYT VCLHSEVFVT TQGGNFPHFL 480 MGHRRYLYGG HSKTINPDKR KLALLFDNPS IRWEDFKRQM QDMLRHSDQK GVELKKPSSS 540 LYTFPMPDWL LRCGKSCRLR WINYLRPDLK RGNFTEEEDE LIIKLHSLLG NKWSLIAGRL 600 PGRTDNEIKN YWNTHIKRKL ISRGLDPQTH RPLNDTTTAT GAATTPASRL DFRNISPPSA 660 PKMEEDNIEE ASSGTTTEED QQQQQQQQQK LQDHYMYKCS DLNLDLSIGL EPFQSEPTRA 720 SSGNSAESRL QQNNYQVFGT VQKAVVTQAV CLCCQVGFQS SEACRNCQCA NGFYRFHRPL 780 NS

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence

MHGYSRLGNP RAAGSPPSSP RCRHGRNKNA GGRGPKQSIV EKVVVLLISV VFKRRGVLLF  60
APLLYISGML LYMGSVSFDV VSLKNAVVVV SKRSPPGSLY RSPQVFQKLW PYMQAESNHT  120
HNFLMTVWNS KVHQVWKPCI SEDTPKEGTA LPKSNGLFII EANGGLNQQR LSICDAVAVA  180
GLLNATLLIP IFHLNSVWRD SSHFGNIFDE DFFIHALRNH VNVVRELPGD ILERFDNNIS  240
NIVNLRVKGW SSPAYYLQKV LPKLEKMGAV RIAPFSNRLA HAVPSNVQRL RCLANFEALR  300
FSNSIRILAD KMVDRMIKSS SHSGGKYVSV HLRFEEDMVA FSCCEYDGGE EEKREMDIAR  360
ERGWRGKFRR RGRVIRPGAN RVDGKCPLTP LEVGMMLRGM GFDNTTSVYI AAGKIYKAEK  420
YMAPLKQMFP RLEMKDTLAT AEELAPFQGH LSRLAALDYT VCLHSEVFVT TQGGNFPHFL  480
MGHRRYLYGG HSKTINPDKR KLALLFDNPS IRWEDFKRQM QDMLRHSDQK GVELKKPSSS  540
LYTFPMPDWL LRCGKSCRLR WINYLRPDLK RGNFTEEEDE LIIKLHSLLG NKWSLIAGRL  600
PGRTDNEIKN YWNTHIKRKL ISRGLDPQTH RPLNDTTTAT GAATTPASRL DFRNISPPSA  660
PKMEEDNIEE ASSGTTTEED QQQQQQQQQK LQDHYMYKCS DLNLDLSIGL EPFQSEPTRA  720
SSGNSAESRL QQNNYQVFGT VQKAVVTQAV CLCCQVGFQS SEACRNCQCA NGFYRFHRPL  780
NS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-61	MYB family protein