PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1276860.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 449aa MW: 49959.9 Da PI: 8.9205

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1276860.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.2	3.4e-16	22	112	2	79
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 Wt e++ Liea++ ++er +++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e e+++ ++e+ s + Pd.00g1276860.m01 22 WTVGETMILIEAKKMDDERRMKRSgdaagsetrsskPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVREYERREgREEAASYW 112 ***********96655555432234444445444999**************************************996344444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MADQGGNGTS SVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRSGDAAG SETRSSKPAE 60 LRWKWVEDYC WKKGCLRSQN QCNDKWDNLM RDYKKVREYE RREGREEAAS YWKLEKSERK 120 DRNLPTNMVP QIYEALVDVV EKREAGHHQI RVVGGAPVSG SNVPNPTIGY VVERPIISTS 180 VHQASLPPPV MQHHISVPPI AALPLLPPAP LAVQPPPTLP YSQPMPTDPS SIAFFCFCLH 240 QQTNPSLSSS STSAFSLNSA RFFKYFSLQS VTLMATTGNK NINAKLVLLG DVGAGKSSLV 300 LRFVKGQFIE FQESTIGQER YHSLAPMYYR GAAAAIIVYD LTNQASFERA KKWVLELKSQ 360 GNPNMVMALA GNKADLVEAR TVAAEDAQAY AQENGLFFLE TSAKTADNVN DIFYEIAKRL 420 PRVQPVQNPA GMVLMDRPSE RVASSSCCS

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MADQGGNGTS SVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRSGDAAG SETRSSKPAE  60
LRWKWVEDYC WKKGCLRSQN QCNDKWDNLM RDYKKVREYE RREGREEAAS YWKLEKSERK  120
DRNLPTNMVP QIYEALVDVV EKREAGHHQI RVVGGAPVSG SNVPNPTIGY VVERPIISTS  180
VHQASLPPPV MQHHISVPPI AALPLLPPAP LAVQPPPTLP YSQPMPTDPS SIAFFCFCLH  240
QQTNPSLSSS STSAFSLNSA RFFKYFSLQS VTLMATTGNK NINAKLVLLG DVGAGKSSLV  300
LRFVKGQFIE FQESTIGQER YHSLAPMYYR GAAAAIIVYD LTNQASFERA KKWVLELKSQ  360
GNPNMVMALA GNKADLVEAR TVAAEDAQAY AQENGLFFLE TSAKTADNVN DIFYEIAKRL  420
PRVQPVQNPA GMVLMDRPSE RVASSSCCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-54	Trihelix family protein