PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1276090.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 404aa MW: 45919.2 Da PI: 8.5427

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1276090.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.9	4.8e-22	122	218	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt++ v++Li+++ ++++ ++ +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ + Pd.00g1276090.m01 122 KWTDNVVRLLIAIVACVGDDGTLESgeglkrksgilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPA 213 7************555554432223555666888********************************************6699999998 PP trihelix 81 yfdql 85 + d++ Pd.00g1276090.m01 214 LMDSM 218 88887 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MDSSGLGSGF LSGPSGGILD LESSIPRRQE IQLGHPLLAH HQHHMNVMSG VKGDHDPIGL 60 VEVKGSIPKV CSTTVKGKAV APFNANNGYN LSDEDEPSYT DDGGENFEGA KGKKGSPWQR 120 MKWTDNVVRL LIAIVACVGD DGTLESGEGL KRKSGILQKK GKWKTVSKIM ISKGCHVSPQ 180 QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDSMPH LSAKAKDDVR KILSSKHLFY 240 KEMCAYHNGQ RIPDCHDLDL QGYSLPLGRK KASEEDGHFW PQYVLDSFEI EMGEIFQDPT 300 KSLWERRDWI KKQKLQLQEQ RVGFQAEALE LEKQRYKWLR YCSKKDRELE RLRLENERMK 360 LENERKVLQL RQKELEIDLR RSDASLEPSS LGLGRDQIDL GRHQ

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MDSSGLGSGF LSGPSGGILD LESSIPRRQE IQLGHPLLAH HQHHMNVMSG VKGDHDPIGL  60
VEVKGSIPKV CSTTVKGKAV APFNANNGYN LSDEDEPSYT DDGGENFEGA KGKKGSPWQR  120
MKWTDNVVRL LIAIVACVGD DGTLESGEGL KRKSGILQKK GKWKTVSKIM ISKGCHVSPQ  180
QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDSMPH LSAKAKDDVR KILSSKHLFY  240
KEMCAYHNGQ RIPDCHDLDL QGYSLPLGRK KASEEDGHFW PQYVLDSFEI EMGEIFQDPT  300
KSLWERRDWI KKQKLQLQEQ RVGFQAEALE LEKQRYKWLR YCSKKDRELE RLRLENERMK  360
LENERKVLQL RQKELEIDLR RSDASLEPSS LGLGRDQIDL GRHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-72	Trihelix family protein