PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1253300.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 371aa    MW: 42250.4 Da    PI: 9.1745
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1253300.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05129150223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +C  Cg++F +++ L +H + H
  Pd.00g1253300.m01 129 VCRVCGRRFYTNEKLLNHFKIH 150
                        6*****************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    
MLKHLKFPPI FCTVQSKRLE TLNPLTLLIR YCHFQSKLGF NSSSPSLCLA PQKIVENSVA  60
IFWDLDTKPP KSVSPYEAAV KLKRAASSFG LVRHMIAYAN RHALNYVPQV VRERKERNRV  120
VIRDGELNVC RVCGRRFYTN EKLLNHFKIH EREHAKRLNQ IESARGSRRV KLVGKYSMKM  180
EKYKNGARDV LTPKAGRGLA DEVKRAGFWV RSVVDNPQRV DAALRNHIVD MMDHKRAECL  240
MLVSDDSDFV DVVMEAKLRC LKTVVVGDFG DGALKRAADS GFSWNEILIG KAKKEAVSVV  300
GKWKDRDVLK RLEWTYKPDE EEQSVNSWDD EVGGESEDEE IEGIVGVNDN LGKDVSGRWW  360
ELDSDADSSK C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-105C2H2 family protein