PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g1228660.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 336aa MW: 37948.9 Da PI: 4.9868 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.5e-19 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Pd.00g1228660.m01 57 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAHELGLQPRQVAVWFQNRRARWK 110 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.5 | 6.5e-42 | 56 | 148 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+d+ +Lk++yd+lk + ++L++e+e+L +e+k Pd.00g1228660.m01 56 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAHELGLQPRQVAVWFQNRRARWKTKQLERDFGVLKANYDSLKLNYDNLQHENEALVKEIK 147 69***************************************************************************************998 PP HD-ZIP_I/II 93 e 93 + Pd.00g1228660.m01 148 Q 148 7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 336 aa Download sequence |
MKRLGSSDSL GAMISICPST EEHSPRNNHV YRRDFQSMLD GLDEEGCVEE GGHVSEKKRR 60 LSVEQVKALE KNFEVENKLE PERKVKLAHE LGLQPRQVAV WFQNRRARWK TKQLERDFGV 120 LKANYDSLKL NYDNLQHENE ALVKEIKQLK SKLQEENAES NNLSVKEEQM VAKDQSNYEV 180 VDHEQSKSPP PPPPGSSVPA TESKELNFES FNNTNNGAVG LEAVSLFPDF KDGSSDSDSS 240 AILNEDNSPN LTISSSGMLQ NHQLMKSPAS TSLKFNCSSS SSPSSSSMNC FQFQKTYHPQ 300 FVKIEEHNFF SSEEACSFFS DEQAPTLQWC CPDQWN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 57 | 86 | KKRRLSVEQVKALEKNFEVENKLEPERKVK |
2 | 105 | 113 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22430.1 | 5e-65 | HD-ZIP family protein |