PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1224490.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 231aa    MW: 25759.2 Da    PI: 8.1703
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1224490.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2435.9e-75221942170
              YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvekee 90 
                        ++ s s+q+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhC++llsvn++      + ++hl + + ++   lle+++++ ++ + ++++ +
  Pd.00g1224490.m02  22 HLLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCSNLLSVNMRALLLPPPNNQHLPHPFFNTphnLLEDMRNAPSSNTLMNHQPN 113
                        56789**********************************************99999******999877645678888888777777766666 PP

              YABBY  91 sastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         +++s+ + +    +++e+p++p  v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  Pd.00g1224490.m02 114 YPNESIMAIRGGGLDHQEIPKPPAaVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 194
                        666666666667888999**999889*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MSSAAASSTA FNSPDQQQQQ QHLLSPSDQL CYVHCNFCDT VLAVSVPCSS LFKTVTVRCG  60
HCSNLLSVNM RALLLPPPNN QHLPHPFFNT PHNLLEDMRN APSSNTLMNH QPNYPNESIM  120
AIRGGGLDHQ EIPKPPAAVN RPPEKRQRVP SAYNRFIKDE IQRIKAGNPD ISHREAFSAA  180
AKNWAHFPHI HFGLMPDQPV KKTNMRQQEG EDMIMKDGFF STPANVGVSP Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.17e-82YABBY family protein