PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1224490.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 232aa    MW: 25887.3 Da    PI: 8.1703
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1224490.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2435.9e-75221952170
              YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeenlksnveke 89 
                        ++ s s+q+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhC++llsvn++      + ++hl + + ++    l+e+++++ ++ + ++++ 
  Pd.00g1224490.m01  22 HLLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCSNLLSVNMRALLLPPPNNQHLPHPFFNTphnlLQEDMRNAPSSNTLMNHQP 113
                        56789**********************************************999999*****999877756767777777777666666666 PP

              YABBY  90 esastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        + +++s+ + +    +++e+p++p  v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  Pd.00g1224490.m01 114 NYPNESIMAIRGGGLDHQEIPKPPAaVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 195
                        6666666665657888999**999889*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MSSAAASSTA FNSPDQQQQQ QHLLSPSDQL CYVHCNFCDT VLAVSVPCSS LFKTVTVRCG  60
HCSNLLSVNM RALLLPPPNN QHLPHPFFNT PHNLLQEDMR NAPSSNTLMN HQPNYPNESI  120
MAIRGGGLDH QEIPKPPAAV NRPPEKRQRV PSAYNRFIKD EIQRIKAGNP DISHREAFSA  180
AAKNWAHFPH IHFGLMPDQP VKKTNMRQQE GEDMIMKDGF FSTPANVGVS PY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.14e-80YABBY family protein