PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1223620.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 372aa MW: 38597.8 Da PI: 6.8054

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1223620.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.7	2.5e-35	86	192	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnss 86 ++++ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+ ai+++tgt++ +a ++ + + s sa+ Pd.00g1223620.m01 86 PTRRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEDAIIQATGTGTVPAIAVsvggtlkIPTTASTSAD--- 174 57999***********************************************************8888854444433221111112222... PP TCP 87 sgkaaksaakskksqksaa 105 +++++s++++k+++ s++ Pd.00g1223620.m01 175 -DNSSPSSTTKKRKRPSNS 192 .122333322222222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MTSYLEDQDD DGGTSDLSTS TGDPEDNNNN GNGVVSKQPN FDETTAFQQL KEEPIDSDPP 60 PQAHSIGMVP VAMQMPMSVA VPVSNPTRRA STKDRHTKVE GRGRRIRIPA TCAARIFQLT 120 RELGHKSDGE TVRWLLEHAE DAIIQATGTG TVPAIAVSVG GTLKIPTTAS TSADDNSSPS 180 STTKKRKRPS NSEFVDVKND AVTQSSGLAP VGPAAPQGLV PVWAVGGAGL MVPANAFWMG 240 PVGSGGGPSG PQPQIWALSP TVTPVFNVAG ATRPVSSFVA NNGGGVEVRA PSPALSNSAA 300 STSTVGPRAA KRSSTTMAPS VSSSSNNSNG SGSGASKAQM LRDFSLEIYD KQELQFMGRP 360 VGTPTTHQHQ TQ

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MTSYLEDQDD DGGTSDLSTS TGDPEDNNNN GNGVVSKQPN FDETTAFQQL KEEPIDSDPP  60
PQAHSIGMVP VAMQMPMSVA VPVSNPTRRA STKDRHTKVE GRGRRIRIPA TCAARIFQLT  120
RELGHKSDGE TVRWLLEHAE DAIIQATGTG TVPAIAVSVG GTLKIPTTAS TSADDNSSPS  180
STTKKRKRPS NSEFVDVKND AVTQSSGLAP VGPAAPQGLV PVWAVGGAGL MVPANAFWMG  240
PVGSGGGPSG PQPQIWALSP TVTPVFNVAG ATRPVSSFVA NNGGGVEVRA PSPALSNSAA  300
STSTVGPRAA KRSSTTMAPS VSSSSNNSNG SGSGASKAQM LRDFSLEIYD KQELQFMGRP  360
VGTPTTHQHQ TQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-55	TCP family protein