PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1223160.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 902aa    MW: 97593.6 Da    PI: 5.1135
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1223160.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.4e-06259282427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        + C+++++tGtCk+ ++ kF+H++
  Pd.00g1223160.m01 259 PDCSYYLKTGTCKFRSNRKFNHPR 282
                        78***************9999995 PP
2zf-CCCH322.1e-10328353126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ++++ C++++r+  C+yG +C+F+H+
  Pd.00g1223160.m01 328 PGERDCPYYMRNLSCRYGLSCRFNHP 353
                        5789*********************9 PP
3zf-CCCH201.2e-06829855127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C +f+ tG C + ++Ck++H++
  Pd.00g1223160.m01 829 PGQPVCIYFSTTGDCEFKSNCKYHHPK 855
                        5789*********************96 PP
4zf-CCCH21.54.2e-07876900226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ++ +C  ++ +G+C+ G+ CkF H+
  Pd.00g1223160.m01 876 GQNICTQYSTYGICNSGPACKFDHP 900
                        6789********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    
MFPAAAVALR LLLPVSVSLY VLYKYWRSGR QTESWVPTNS GDNGVVRPKS SKNDVVPSDG  60
DLAFVEEILK NDHVFLNKIR TLDPAVLDEL LKIDPVALDA LLRIDPAVLR DSAELDPAII  120
DAICELSEKE EGDEEADWSC SRPVTESSLV IGVPTNSGNN DVAPSNSGNN DVVPPNSGNN  180
DVVPCPELSD RDLAILEEIL KDDPVLLDEI RTHDPAVINE LRKFDPAVLR EMVLDSAESQ  240
ERDEETSRSR DYPLRPEAPD CSYYLKTGTC KFRSNRKFNH PRTTTKNNQD DFWSGGRKDG  300
RDGSFNPRSR EPFAAPFVEN FMGLPIRPGE RDCPYYMRNL SCRYGLSCRF NHPDPTPAGE  360
SDPPSGSWGN ADGVWAQSEA GNKDEASGWA KPAFINDNQN DSWKKPSGVD DNKRASWGKA  420
DGGSTWTKQD GDSTWNKQGE GSTWNKQDGS SAWNKPAGDS SWSKQADATA GRESGRVGNQ  480
DNGWKRASSF GGSQSIDGVN GDQPGDFNNN RSGGNWRGGS GRGNSDRGGF RGGRGFVGRG  540
GDREEVRGGF GGRGGDRGSF DGRGRSDKGG FGGRGYGGGG RGRYQSGGWS NRNESMDNNS  600
SGWSKGADGA GEGWKRDNGG GSWNQGGGSK NDWQGRNSSG WSSQSSGWNQ SDVTKGIGGS  660
GSGWNQTVEA KYTAGTQDKG TGSHNEVGRS WGNNWKSSDT SNGDQSSRWK QSTAAKEVKG  720
NTDQDGGWNK GPSSNTQAGG WGNQGSGWNK GTGSGFGGGT GESPQQQQVE ELPERPGQPV  780
CIYFSTTGDC YRNKYACTST ICFNHSVTET SAYEQYPQQQ QVEELPERPG QPVCIYFSTT  840
GDCEFKSNCK YHHPKYQTAV PPQCALNDKG LPLRPGQNIC TQYSTYGICN SGPACKFDHP  900
SL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1572580GGRGYGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.13e-31C3H family protein