PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G48195.1 | ||||||||
Common Name | F21D18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 82aa MW: 9450.74 Da PI: 8.2836 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.3 | 1.5e-09 | 56 | 80 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +++++C++++r+G+C+ G++CkF H AT1G48195.1 56 PGQAICPHYSRFGICRSGPTCKFDH 80 5789********************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.13 | 9 | 36 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.976 | 9 | 37 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-6 | 14 | 37 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 53 | 80 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0093 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.812 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-7 | 57 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MSEEKFPERP GEPECSYYLR TGNCYLKQNC KYHHPKNITP SEPQCTLNDK GLPLRPGQAI 60 CPHYSRFGIC RSGPTCKFDH FT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.63148 | 1e-139 | silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT1G48195 | |||||
AtGenExpress | AT1G48195 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G48195.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G48195 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC023673 | 1e-137 | AC023673.3 Genomic sequence for Arabidopsis thaliana BAC F21D18 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 1e-137 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_973988.1 | 1e-55 | Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
Swissprot | Q3ECU8 | 1e-56 | C3H13_ARATH; Zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | D7KC26 | 1e-46 | D7KC26_ARALL; Zinc finger (CCCH-type) family protein | ||||
STRING | AT1G48195.1 | 6e-55 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15633 | 9 | 17 | Representative plant | OGRP13753 | 3 | 4 |
Link Out ? help Back to Top | |
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Phytozome | AT1G48195.1 |
Entrez Gene | 2745816 |
iHOP | AT1G48195 |
wikigenes | AT1G48195 |
Publications ? help Back to Top | |||
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