PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1209290.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 308aa    MW: 33510.9 Da    PI: 9.412
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1209290.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.79.4e-12556147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                       +++WT+eE+e l+ +v+++G+g Wk I +         +R+  ++k++w+++
  Pd.00g1209290.m01  5 KQKWTAEEEEGLLAGVAKHGPGKWKNILKDPEfssvlIHRSNIDLKDKWRNL 56
                       79**********************************999***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MGNQKQKWTA EEEEGLLAGV AKHGPGKWKN ILKDPEFSSV LIHRSNIDLK DKWRNLSVST  60
SGHGSKDRPR GTKVKNSVAA QHLVQNSAPI ASVRPNASPA SAPPNSSPAS VRPSASPASV  120
CPNASPDAMM DDAVNSAPEL KSASQYDPMI FQALSTMKDM NGSDLGAILN FIEQRHEVPV  180
PPNFRRLLGP RLRRLVSQGK LEKVQNGYKL KKDATFGTKT PTPTRNQRDV RPRKLQNSGS  240
MTFTETVQDA AETAAHKLAD AEDKSFVAAV AMKEADRISK MTEDNESILQ LIEEIYEQCS  300
CGEVVALA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-62MYB_related family protein