PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1189140.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 547aa MW: 62261.3 Da PI: 5.2303

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1189140.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.2	3.9e-27	53	135	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++++++ k plWeevs+km e g +r++k+Ckek+en+ k+++++ke+ + + + +++f+qlea Pd.00g1189140.m01 53 RWPRQETLALLKIRSDMDAEFKEASIKVPLWEEVSRKMGELGHNRTAKKCKEKFENIYKYHRRTKESGRPN----GKAYRFFEQLEA 135 8***************************************************************99974....4569***985 PP
2	trihelix	95.5	4.8e-30	383	467	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev aLi++r + + +++++ k+plWee+s++m + g+ rs+k+Ckekwen+nk+y++ike++kkr +e+s+tc y + l+ Pd.00g1189140.m01 383 RWPKEEVEALIKIRADFDLQYQESGPKGPLWEEISAAMVKLGYDRSAKRCKEKWENINKYYRRIKESNKKR-PEDSKTCGYVRLLD 467 8*******************************************************************8.99****998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MLENSKLPEN PSTATSNQNN EEVAGGGGPA SVGFEEEDRA GLEEGYRNLA GNRWPRQETL 60 ALLKIRSDMD AEFKEASIKV PLWEEVSRKM GELGHNRTAK KCKEKFENIY KYHRRTKESG 120 RPNGKAYRFF EQLEALDHHD FELPPPPASE KVQTPVAEIA TNPTNVVYNA IPCSSIQHPD 180 SSFVENSSST TSSSSKESEG THKKKRRLTE FFDRMMNEVI DKQENLQKKF VEVLEKHEQD 240 RIAREEAWKM QELARIKRER EILVQERSVA AAKDAAVLAF LQKFSEQSGT MQFPEQAFSV 300 HFPAQPPSSM QFPEQPSPVQ LPEQPPSGQF PEQSTPVQLP VNSQADTLMD KQEKTNDANV 360 VHMSLDKQER NNGRSYMHMS SSRWPKEEVE ALIKIRADFD LQYQESGPKG PLWEEISAAM 420 VKLGYDRSAK RCKEKWENIN KYYRRIKESN KKRPEDSKTC GYVRLLDALH NKKTNSVESQ 480 VNSTYELKPE ELLMHMMGGQ AEQHQPETVT EDGDSENVDQ IQGDDENADG DGYQIVSGNP 540 SSMEIMS

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MLENSKLPEN PSTATSNQNN EEVAGGGGPA SVGFEEEDRA GLEEGYRNLA GNRWPRQETL  60
ALLKIRSDMD AEFKEASIKV PLWEEVSRKM GELGHNRTAK KCKEKFENIY KYHRRTKESG  120
RPNGKAYRFF EQLEALDHHD FELPPPPASE KVQTPVAEIA TNPTNVVYNA IPCSSIQHPD  180
SSFVENSSST TSSSSKESEG THKKKRRLTE FFDRMMNEVI DKQENLQKKF VEVLEKHEQD  240
RIAREEAWKM QELARIKRER EILVQERSVA AAKDAAVLAF LQKFSEQSGT MQFPEQAFSV  300
HFPAQPPSSM QFPEQPSPVQ LPEQPPSGQF PEQSTPVQLP VNSQADTLMD KQEKTNDANV  360
VHMSLDKQER NNGRSYMHMS SSRWPKEEVE ALIKIRADFD LQYQESGPKG PLWEEISAAM  420
VKLGYDRSAK RCKEKWENIN KYYRRIKESN KKRPEDSKTC GYVRLLDALH NKKTNSVESQ  480
VNSTYELKPE ELLMHMMGGQ AEQHQPETVT EDGDSENVDQ IQGDDENADG DGYQIVSGNP  540
SSMEIMS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	207	KKKRR
2	203	208	KKKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	5e-97	Trihelix family protein