PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1187550.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 298aa    MW: 34142.4 Da    PI: 5.0404
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1187550.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-184087148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT eEd  l d+++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Pd.00g1187550.m01 40 KGPWTVEEDSVLFDYINTHGEGRWNSLARHAGLKRTGKSCRLRWLNYL 87
                       79********************************************97 PP
2Myb_DNA-binding482.8e-1593136146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Pd.00g1187550.m01  93 RGNITLQEQLLILQLHSRWGNR-WSKIAEYLP-GRTDNEIKNYWRT 136
                        7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MDMADVHVHD HVRAGYGSSA ASAETHDQIP SEEEDVDLRK GPWTVEEDSV LFDYINTHGE  60
GRWNSLARHA GLKRTGKSCR LRWLNYLRPS VRRGNITLQE QLLILQLHSR WGNRWSKIAE  120
YLPGRTDNEI KNYWRTRVQK QAKQLKCDVN SKQFQDAMRC VWIPRLIERI QALPQSLPGQ  180
PSTESTGLNT ASKSQYWIDS NFMPETSGST SSESSDQLQV CSIPDPSTTD QFMNYPSTNQ  240
YGSDNGSGCY QYGTNSDFPG FEQSNYWSSN GGDLSVENLW NEENIWFLQQ QLSDDQWN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.13e-79MYB family protein