PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g1140600.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 493aa MW: 53549.9 Da PI: 8.0623 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26 | 1.6e-08 | 111 | 131 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++ + G C+yGd+CkF H+ Pd.00g1140600.m01 111 VCNYWVQ-GNCSYGDKCKFLHC 131 7******.*************7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 493 aa Download sequence |
MDVDGGGNKR VFHRLGGPQS DPSKNQKVCF HWRAGKCNRH PCPFLHRELP PPPSQQGLNG 60 TASSKRHHAF SATTDGPSAR NRGPNNFNGG ASSTWGRTGG TRAFVRKMEK VCNYWVQGNC 120 SYGDKCKFLH CWSMGDSFSL LTQLDGHQKV VSGIALPSGS DKLYTGSKDQ TVRVWDCQSG 180 QCLGVINLGG EVGCMISEGP WVFVGIPDVV KAWNTQTNSE LSLSGPVGQV YALVVGNDLL 240 FAGTQDGSIL AWKFNAVTNC FEPAASLKGH TLAVVSLVVG ANRLYSGSMD HSIRVWSLET 300 LQCIQTLTEH TSVVMSVLCW DQFLLSCSLD QQLKVWVATQ SGNLEVTYTH KEEHGLITLC 360 GMHDSEAKPV LLCACNDNTV RVYDLPAFSE RGKIFSKEEI RSIQVGPGGL FFTGDGTGQV 420 KTDMMGWRAF GFIVVGVSRI SSSTVRSPPF TVCHGRKESI LAHAKLRLTA GQIYLESELY 480 GSSVCVNVLD FGV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51980.1 | 0.0 | C3H family protein |