PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1138660.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 24954.6 Da PI: 7.5027 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.3 | 9.4e-14 | 37 | 74 | 13 | 50 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++R ++ KKA+ELS+LCd+ v+v+ ++ + ++ +++ Pd.00g1138660.m01 37 LARRMSTLKKKASELSTLCDVAVCVVSVGANREIETWP 74 67899********************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MAPPQLKSKK PKKMKIKMKP QVLKIDANCG SVLKPALARR MSTLKKKASE LSTLCDVAVC 60 VVSVGANREI ETWPENQQEA KSILLKHKNL GKLGKKIEKG SFSARKGTDY SFLETMLEAL 120 NERIGVVMMR DGVGTKTRTT STCSFMEFYD NIMGTSAPPD PPDQQQSMLL VDQVPHHQQE 180 DYSTTNSDGF FLDDLHIAAA SPTMSSIDDY VSWLLEDHND VATSD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 1e-11 | M-type_MADS family protein |