PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1130050.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 272aa    MW: 29834.3 Da    PI: 8.1919
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1130050.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+ Ed++l  ++k +G g W++ +++ g++R++k+c++rw++yl
  Pd.00g1130050.m01 14 RGAWTALEDKILTSYIKAHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61
                       89********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MGRSPCCSKQ GLNRGAWTAL EDKILTSYIK AHGEGKWRSL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SAGRLPGRTD NEIKNYWNTT LGKKAKGEPI STGSSKETSP PPTKSRAKRR  120
EIESKTTKPS AAAATLPPVI RTKATRLTKV LVPTIPQIPS DDYNQTANAS SSTNPSELQA  180
HQTQLTDQQV NVGDSTNNLN NNYGCTDEDD DIEAKGGFCN AFQSLPLDEA MINATWTGGN  240
DCDLEDYGAT LDLDSLAFLL DSEEWPSQEN IC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-44MYB family protein