PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1130020.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 288aa MW: 32669.7 Da PI: 5.4838

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1130020.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3e-15	14	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+d+vk +G g+W + +r+ g ++R++k+c++rw++yl Pd.00g1130020.m01 14 KGAWTALEDQILIDYVKDHGEGRWGKLSRETGeptltlrtsLKRCGKSCRLRWLNYL 70 79*****************************************************97 PP
2	Myb_DNA-binding	50.5	4.8e-16	76	120	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l++ ++k+lG++ W++Ia +++ gRt++++k++w+++ Pd.00g1130020.m01 76 RGNITEDEEDLIIMLHKLLGNR-WALIAGRLP-GRTDNEIKNYWNSV 120 7999****************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MGRSYRCDKD GLSKGAWTAL EDQILIDYVK DHGEGRWGKL SRETGEPTLT LRTSLKRCGK 60 SCRLRWLNYL RPEIKRGNIT EDEEDLIIML HKLLGNRWAL IAGRLPGRTD NEIKNYWNSV 120 LRKKAQESHS ERSRNEWKTT KDTEKAVPSL KMDSHFIQNG LTPTSCINNE QLGTTNTLAE 180 PFTSGVEATN MEVKSDSSDG FLPITRENDM TWNFIRDLNA GELGISEFLH TDFSKLCELN 240 TTIFDCTSGC RNRSLMSTTT AEAPLNLQEW LNDWAADDNC LPEAAFGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-52	MYB family protein