PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1129220.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 361aa    MW: 39506.4 Da    PI: 8.1243
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1129220.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-08105125526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C++f++ G+Ck Gd C FaHg
  Pd.00g1129220.m01 105 ACPDFRK-GHCKKGDACEFAHG 125
                        7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MMLGEPHRPN PTVHVPPWLQ LDDPTAEVYS PFPLSGVSVN SEGNANGADY NSPYYLHEAL  60
TTMFEFKVRR CARGRSHDWT ECPYAHPGEK ARRRDPRKYH YSGTACPDFR KGHCKKGDAC  120
EFAHGVFECW LHPARYRTQP CKDGTSCKRR VCFFAHTPEQ LRVLPQQSPR GSNSLGTAES  180
YDGSPLRQAI EAAASCGKTL PFLSSTPEES PEISPPVSPM TRSLSRSLGS NSVNEMVASL  240
RNLQLGKVKS LPSSWNVQVG SSGFGSPGSP GFVSPRGSIL RPGFCSLPST PTRVPGRSGI  300
GYLDFCEEGC EEEPAMERVE SGRGLRAKMF ERLREENSLG RVDSGPSGGA PDVGWVSELV  360
K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-105C3H family protein