PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1117930.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 233aa    MW: 27288.8 Da    PI: 5.88
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1117930.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF497.7e-161253344
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       i n+  r+ tf kR++ i KKA ELS LC+++v++i++  ++
  Pd.00g1117930.m01 12 IPNEGTRKMTFRKRKKSIYKKADELSKLCGIDVCLIVYEADQ 53
                       779999*******************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MVAPRRRSLE LIPNEGTRKM TFRKRKKSIY KKADELSKLC GIDVCLIVYE ADQKKGRAVQ  60
PETWPRDPTQ FKRILNKYKD SKDTSTPGLK RNFDMSDFYE DKKDHVDEDD EKFQNLGKKI  120
FEEEYPTKFQ NLGKKISEEE YPTWDDRIDD FSQDELTELI ASLESKIQVA TTKIDSMERY  180
MGFAKKQNQS LVREEINHDE QPYQVPALMS PPSLVHYPML PSAWVSSSES EKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1527RRRSLELIPNEGTRKMTFRKRKK
22327RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.13e-22M-type_MADS family protein