PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1116440.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28640.1 Da PI: 6.7189 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.2 | 1.4e-11 | 14 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 +g+W+++Ed +l+ +++++G +W+ ++ + R++k+c++rw +yl Pd.00g1116440.m01 14 KGPWSPDEDHKLIAYIQRYGIWNWSQMPKPAVchvsgLARSGKSCRLRWVNYL 66 79******************99****9999989999***************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.1e-17 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e ++++++ +G++ W++Ia+t++ gRt++++k++w+++l Pd.00g1116440.m01 72 RGSFSKEEEEAILKLHETMGNR-WSAIAATLP-GRTDNEIKNFWHTHL 117 899*******************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MVKSQQCEKA AVKKGPWSPD EDHKLIAYIQ RYGIWNWSQM PKPAVCHVSG LARSGKSCRL 60 RWVNYLRPDI KRGSFSKEEE EAILKLHETM GNRWSAIAAT LPGRTDNEIK NFWHTHLKKR 120 FKATEPVQEA QVFNDKKKFS ETELFLLGEA PKASKLETTS TSSGPVHGDH NKDQIAEQNI 180 CASETFGELQ SLWAESHIVR DSEAIFTDPG FTLSNPPTQS WLQEPIFPSG SSYNDASNDY 240 WVNLSMQAEI DGI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 1e-55 | MYB family protein |