PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1086580.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 170aa MW: 18999.7 Da PI: 8.506 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 40.9 | 3.4e-13 | 38 | 67 | 27 | 56 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 a+++++LA+kl+L rqV vWFqNrRa+ k Pd.00g1086580.m01 38 AKQKQDLARKLNLRPRQVEVWFQNRRARTK 67 6899************************98 PP | |||||||
2 | HD-ZIP_I/II | 89.9 | 3.1e-29 | 37 | 100 | 25 | 88 |
HD-ZIP_I/II 25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ++K++lar+L+l+prqv+vWFqnrRARtk+kq+E d+e Lk+++++lkeen++L+ke +eL+ Pd.00g1086580.m01 37 VAKQKQDLARKLNLRPRQVEVWFQNRRARTKLKQTEADCELLKKCCETLKEENRKLHKELQELK 100 479************************************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MSFDEACNTG LGLSLGCRPS TASKIEEAES TDLHQAVAKQ KQDLARKLNL RPRQVEVWFQ 60 NRRARTKLKQ TEADCELLKK CCETLKEENR KLHKELQELK LMKQTATAAA PPFYMQFPTA 120 TLTMCPSCEK ICNGGDHHNH HGSSTSSFLI GSKPAHLIFN PFSTHPSTAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 70 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 4e-47 | HD-ZIP family protein |