PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1082100.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 315aa    MW: 34960.2 Da    PI: 6.7788
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1082100.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86e-091451148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg WT+eEd +l  +++q G++        +   R++k+c++rw +yl
  Pd.00g1082100.m01 14 RGQWTPEEDNKLSSYIAQNGTR--------L--QRCGKSCRLRWTNYL 51
                       89******************99........4..5************97 PP
2Myb_DNA-binding43.48e-1458100246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g ++  E++ +v+++   G++ W+ Ia+ ++ gRt++++k++w++
  Pd.00g1082100.m01  58 GQFSDAEEQTIVKLHSVVGNR-WSIIAAQLP-GRTDNDVKNHWNT 100
                        7899*****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIA QNGTRLQRCG KSCRLRWTNY LRPDLKHGQF  60
SDAEEQTIVK LHSVVGNRWS IIAAQLPGRT DNDVKNHWNT KLKKKLSGMG IDPVTHKPFS  120
HLMAEIATTL APPQVAHLAE AALGCFKDEM LHLLTKRRID FQFQHSNATP GNSTATYINS  180
KQEEKDDTIE KIKIGLSRAM QEPDMLTSNK PWDPTGATSA NFTGNCSAFP LPMSGFQYGP  240
STFGNEGDGS PWSQSMCTGS TCTGAEQRGQ LHDKLGEQNG EESESGKELR NGSNIFNSDS  300
ILWDLPSDDL MNPMV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-111MYB family protein