PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1081820.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 570aa MW: 61790.8 Da PI: 8.0473 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.0004 | 64 | 84 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs+ L H+r+H Pd.00g1081820.m01 64 CEVCNKGFSSGKALGGHMRMH 84 ********************9 PP | |||||||
2 | zf-C2H2 | 15.8 | 3.9e-05 | 138 | 158 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F++ +L H+r+H Pd.00g1081820.m01 138 CCVCGKNFPSMKSLFGHMRSH 158 9*******************9 PP | |||||||
3 | zf-C2H2 | 11.2 | 0.0011 | 431 | 443 | 1 | 13 |
EEETTTTEEESSH CS zf-C2H2 1 ykCpdCgksFsrk 13 ykC+ CgksF++ Pd.00g1081820.m01 431 YKCSLCGKSFPTA 443 9*********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence |
MDIEDQETRF RPRAGDQGQQ PNKKANQETE SNNGGLFAKL KFPKPEPLDQ ERKYPAPPEF 60 TRICEVCNKG FSSGKALGGH MRMHVQANRE LFQARKNKIQ KPTKILKPNN SDVSSSNGGG 120 GFGVEGNSNS NSSMKPDCCV CGKNFPSMKS LFGHMRSHPE REWRGIQPPP TIAKNSSSST 180 LSDAVPQNNN KADDHQIDSA ATPVGSNNSA PDLSKTLPGW SLTARRGRKS IGSSGNSESV 240 SGLDLSLGVE EQMEEAVHDL LMLAQSNPSF YGLSDKGKGA EMCEATNSNF FITNNSNQAD 300 YIKDKNQVID YEGTSKKRKG TEMCFPSKNM KSEKKWFDEY DSVKGKGVLG IGFGPEKSSV 360 KNFLKLGPME DNKNNNIEEE LSDSQNSESI VLASMKRRKR RKMKLVDLEG VVGEIIGAQG 420 HHQSLHQKLR YKCSLCGKSF PTAEGGHNLD EAQTTMALDQ DHHVAGAGAG SGSGAGGLGA 480 HQAHHQCKIC DKIFPTGQAL GGHKRCHWTG PTEQLLPQSS QAASPGEASQ NAGRKVLNFD 540 LNELPAMEFE EGTDQYGAAG YATSSHNSVT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 316 | 346 | KKRKGTEMCFPSKNMKSEKKWFDEYDSVKGK |
2 | 396 | 402 | KRRKRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 6e-17 | C2H2 family protein |