PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1076820.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 369aa    MW: 42803.2 Da    PI: 6.7829
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1076820.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.12.9e-1061108255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ kl++
  Pd.00g1076820.m01  61 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAIKLRN 108
                        789996.566899****999......44**********99*************97 PP
2B391.46.8e-29186280187
                        EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                        f+k+ltpsdv+k++rlv+pkk+a e+        +++   +++l+++d+  r+W+++++y+k+s+++v+t+GW++Fvk+n+Lk++D+++F+ 
  Pd.00g1076820.m01 186 FQKELTPSDVGKLNRLVIPKKYAVEYfpcicenvEENGVDDIELVFYDKLMRVWKFRYCYWKSSQSFVFTRGWNRFVKENNLKANDVITFYT 277
                        99*****************************87744444889************************************************96 PP

                        -SS CS
                 B3  85 dgr 87 
                         ++
  Pd.00g1076820.m01 278 CEN 280
                        544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    
MPILCLSLPL RFTMEEDAAS SMISSVQRNV APETSDSNDN DFGLLHPNKR ARLDNDVSFA  60
KFKGVVPQQN GHWGAQIYAN HQRIWLGTFK SEKEAAMAYD SAAIKLRNGK DLHRNFPWTN  120
FTIQEPDFQN HYTTDAIIKM IRDGSYPSKF DAFIRSQKQS QTKEMGKGNN SIRVHGDGKI  180
LSRQLFQKEL TPSDVGKLNR LVIPKKYAVE YFPCICENVE ENGVDDIELV FYDKLMRVWK  240
FRYCYWKSSQ SFVFTRGWNR FVKENNLKAN DVITFYTCEN DDQLREEDRE GATFWLIDVM  300
HSERDSKRPC LLEEEINKHE CEDLQVKLEL NLGGSSSYKF QQGECKYSED HKASMADQKG  360
FRLFGVNIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-107RAV family protein