PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1074840.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 342aa MW: 37530.5 Da PI: 7.1284

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1074840.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	64	84	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs+ L H+r+H Pd.00g1074840.m01 64 CEVCNKGFSSGKALGGHMRMH 84 ********************9 PP
2	zf-C2H2	16.7	2.1e-05	138	158	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F++ +L H+r+H Pd.00g1074840.m01 138 CCVCGKNFPSMKSLFGHMRSH 158 9*******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MDIEDQETRF RPRAGDQEQQ PNKKANQETE SNNGGLFAKL KFPKPEPLDQ ERKYPAPPEF 60 TRICEVCNKG FSSGKALGGH MRMHVQANRE LFQARKNKIQ KPTKILKPNN SDVSSSNGGG 120 GFGVEGNSNS NSSMKPDCCV CGKNFPSMKS LFGHMRSHPE REWRGIQPPP TIAKNSSSST 180 LSDAVPQNNN KADDHQIDSA ATPVGSNNSA PDLSKTLPGW SLTARRGRKS IGSSGNSESV 240 SGLDLSLGVE EQMEEAVHDL LMLAQSNPSF YGLSDKGKGA EMCEATNSNF FITNNSNQAD 300 YIKDKNQCER EGCFGNWVWS RKVISEEFLE VGTNGGQQEQ QH

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MDIEDQETRF RPRAGDQEQQ PNKKANQETE SNNGGLFAKL KFPKPEPLDQ ERKYPAPPEF  60
TRICEVCNKG FSSGKALGGH MRMHVQANRE LFQARKNKIQ KPTKILKPNN SDVSSSNGGG  120
GFGVEGNSNS NSSMKPDCCV CGKNFPSMKS LFGHMRSHPE REWRGIQPPP TIAKNSSSST  180
LSDAVPQNNN KADDHQIDSA ATPVGSNNSA PDLSKTLPGW SLTARRGRKS IGSSGNSESV  240
SGLDLSLGVE EQMEEAVHDL LMLAQSNPSF YGLSDKGKGA EMCEATNSNF FITNNSNQAD  300
YIKDKNQCER EGCFGNWVWS RKVISEEFLE VGTNGGQQEQ QH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	2e-17	C2H2 family protein