PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1067270.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 538aa MW: 58201.6 Da PI: 9.735

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1067270.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Pd.00g1067270.m01 74 FICEVCNKGFQREQNLQLHRRGH 96 89*******************88 PP
2	zf-C2H2	13.3	0.00025	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Pd.00g1067270.m01 150 WKCEKCSKRYAVQSDWKAHSKTC 172 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MAASSSSVAP LFGIREEDQN QQMKQQHSST PPTSSTAAAA APPQKKKRNQ PGTPNPEAEV 60 IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEP KRKVYLCPEP 120 TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD 180 CGTLFSRRDS FITHRAFCDA LAQESARHPP SLSTIGSSLY GGSLSNTGLG LSHQVVGPPQ 240 ISSLQQDQCQ SGTAADILRL GGAGAAGAAR TGQFDHLLGS SFRPAAQSSA SFFLTAPDQS 300 TQQQYHDHDQ DNLPFLSNNT TNTTNNNNSA TNNNLLISPD HFNTNVNGTT TAAGVSEATA 360 LLQKAAQMGS TNSSNNTTAS LLRSFGSSSS ATAKSDRPGA LVPSSLGGMF GSDQHDQSHL 420 QDLMNSFANT GGSSIFANAS FGGYDAAAAN RTINMEETKL QQQNSRVVSN IGGADRLTRD 480 FLGVGQVKAM LQLQLRRQAN LLEEVGIFSE NNMSWKKYRD ERGSSTFPRT IIYASSSG

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MAASSSSVAP LFGIREEDQN QQMKQQHSST PPTSSTAAAA APPQKKKRNQ PGTPNPEAEV  60
IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEP KRKVYLCPEP  120
TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD  180
CGTLFSRRDS FITHRAFCDA LAQESARHPP SLSTIGSSLY GGSLSNTGLG LSHQVVGPPQ  240
ISSLQQDQCQ SGTAADILRL GGAGAAGAAR TGQFDHLLGS SFRPAAQSSA SFFLTAPDQS  300
TQQQYHDHDQ DNLPFLSNNT TNTTNNNNSA TNNNLLISPD HFNTNVNGTT TAAGVSEATA  360
LLQKAAQMGS TNSSNNTTAS LLRSFGSSSS ATAKSDRPGA LVPSSLGGMF GSDQHDQSHL  420
QDLMNSFANT GGSSIFANAS FGGYDAAAAN RTINMEETKL QQQNSRVVSN IGGADRLTRD  480
FLGVGQVKAM LQLQLRRQAN LLEEVGIFSE NNMSWKKYRD ERGSSTFPRT IIYASSSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-115	C2H2 family protein