PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g1063000.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 27489.1 Da PI: 5.9658 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +G +W+++++ g++R++k+c++rw +yl Pd.00g1063000.m01 14 KGPWTAEEDKKLVTFLLAHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.1e-15 | 72 | 111 | 6 | 47 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + E++l +d++ +lG++ W++Ia+ ++ gRt++++k++w+++ Pd.00g1063000.m01 72 EAEEQLVIDLHSRLGNR-WSKIAAGLP-GRTDNEIKNHWNTH 111 67***************.*********.************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence |
MGRQPCCDKL GVKKGPWTAE EDKKLVTFLL AHGQCCWRAV PKLAGLRRCG KSCRLRWTNY 60 LRPDLKRGLL NEAEEQLVID LHSRLGNRWS KIAAGLPGRT DNEIKNHWNT HIKKKLIKMG 120 IDPITHEPLR KQVTPPEMPC KPNNPPADLD TNQQNVNIPE HGISSAADSS SSNESQPLEP 180 NLKSEDDPLM SYILSDTFLE DLTWDFSASS EVSSPANNPA EDNSLAWFLD CKDFGVEDFE 240 LGCIN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G22680.1 | 8e-87 | MYB family protein |