PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1052170.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 263aa MW: 30073.1 Da PI: 4.7074 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 72.8 | 6.7e-23 | 2 | 73 | 30 | 101 |
DUF260 30 fanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 f+n+hklFG+sn++k+lk+l++e + +am+s++y+A++r + PvyG+ +vi++lq ql +++el++++++l Pd.00g1052170.m01 2 FQNAHKLFGVSNIVKILKNLEPEMKFEAMRSIIYQANIRDKFPVYGCWEVIWQLQYQLLLAEEELQAVQAQL 73 9******************************************************************99885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence |
MFQNAHKLFG VSNIVKILKN LEPEMKFEAM RSIIYQANIR DKFPVYGCWE VIWQLQYQLL 60 LAEEELQAVQ AQLAMYRQHH HHQHQISSVP EYVTSQLELG MAPPNNSLPL FNHNPQPYNN 120 NNNNAMPALP VTQHHHQQQS YSNSSDAAYS SVYIDSKDNN AANPLWVSNP CTTNNHSNND 180 NSETIQSQLG VLQPLSLQPD VVQDYDELHP FFDTIDDRQS YIDSKEAYES SSEESFKDTT 240 QSMEYAENTL KNAASCYSLT SVN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-14 | LBD family protein |