PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1051980.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 329aa MW: 36818.3 Da PI: 4.4567

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1051980.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.6e-19	94	148	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t +q++ Le+ F +++++ e++ LAk lgL+ rqV +WFqNrRa++k+ Pd.00g1051980.m01 94 KKRRLTVDQVQFLEKSFDMENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKN 148 56689************************************************95 PP
2	HD-ZIP_I/II	127.5	5.7e-41	94	183	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl+ +qv++LE+sF++e+kLeperK la++Lglqprqva+WFqnrRAR+k+kqlEkdye+L+++y++lk++ e+L ke+e+L++e+ Pd.00g1051980.m01 94 KKRRLTVDQVQFLEKSFDMENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKNKQLEKDYEVLQANYNSLKADCESLAKENEKLKAEV 183 9**************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MAGGRVYSRG ASSSSLSVLL QNQRGPCASE PLDSLFLSGS SNSSSASPFL GSRSMVSFED 60 VRGGNGSNRS LFHQYEHEDN GDDDLDEYFH QPGKKRRLTV DQVQFLEKSF DMENKLEPER 120 KILLAKDLGL QPRQVAIWFQ NRRARWKNKQ LEKDYEVLQA NYNSLKADCE SLAKENEKLK 180 AEVLVLSEKL PHKEKESGTS ELSDTNKVSQ EPTQNPTADS LSECEVSKVS AVASKQEDLS 240 SGKSDIFDSD SPHYTDGVHS SILEPGDSSY VFEPDQSDLS QDEEDNLSKS LLPPYIFPKL 300 EDVDYSDTPA NSCNFGFPVE DHAFWSWSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	150	RRARWKNKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-43	HD-ZIP family protein