PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1040340.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 943aa MW: 104492 Da PI: 5.3125

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1040340.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87	2.6e-27	13	89	1	77
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77 aCa+Ck +rrkC + C +apyfpa++ ++f+n+hk+FG+sn++++++ + +++r++a++s++ e++ar +dPv+ Pd.00g1040340.m01 13 ACASCKQQRRKCDETCEMAPYFPASRYSEFQNAHKIFGVSNIQNIMAMAAPDQRQAAAESILTEGNARKNDPVHETS 89 7************************************************************************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence
MENRDQGAAQ NHACASCKQQ RRKCDETCEM APYFPASRYS EFQNAHKIFG VSNIQNIMAM 60 AAPDQRQAAA ESILTEGNAR KNDPVHETSR NASKALSLSL SLAHRDLRLS VDCFRDLRFC 120 KDERALVCFG DKQRFIGTAG AASSLMNPKN TISQIKRLVG RQFSDPVVQR DIKSLPFAVT 180 EGPDGYPLIH ARYLGESRTF TPTQVLGMLF SDLKIIAEKN LNAAVVDCCI GIPVYFTDLQ 240 RRAVLDAATI AGLHPLRLFH ETTATALAYG IYKTDLPEND QLNVAFVDIG HASMQVCIAG 300 FKKGQLKILA HSFDQSLGGR DFDEVLFHHF AAKFKEEYKI DVFQNARACL RLRVACEKLK 360 KMLSANPEAP LNIECLMEEK DVRGFIKRDE FEQISVPILE RVKGPLEKAL LDAQLSIENI 420 HTVEVVGSGS RVPAIIKILT DFFKKEPRRT MNASECVARG CALQCAILSP TFKVREFQVN 480 ESFPFSIALS WKGSGPDTQN GAADNNQSTI VFPKGNPIPS IKALTFYRSG TFSVDVQYAD 540 VSDLQAPAKI STYTIGPFQS TKGERAKLKV KARLNLHGIV SVDSATLLEE EEIEVPVTKE 600 QPKEGAKMET DEAPSDAAPP SSNETDVNMQ DAKGTADASG AENGVPESGD KPVQMETDTK 660 ADAPKRKVKK TNIPVVELVY GGMPPSDVQK AIEKEFEMAL QDRVMEETKD KKNAVEAYVY 720 DTRNKLSDKY QEFVTEPERE AFIARLQEVE DWLYEDGEDE TKGVYIAKLE ELKKQGDPIE 780 ERYKEHTERG TVIDQLGYCI NSYREAAMST DAKFEHIDNS DKQKVLNECV EAEAWLREKK 840 QQQDSLPKYA NPVLLSADVR RKAEALDRFC RPIMTKPKPA PVKPAAPETP TPPPQGNEHQ 900 PQGGDANANA GSNENPADGS NEVPLASEEP METDKPEAPQ SSA

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence

MENRDQGAAQ NHACASCKQQ RRKCDETCEM APYFPASRYS EFQNAHKIFG VSNIQNIMAM  60
AAPDQRQAAA ESILTEGNAR KNDPVHETSR NASKALSLSL SLAHRDLRLS VDCFRDLRFC  120
KDERALVCFG DKQRFIGTAG AASSLMNPKN TISQIKRLVG RQFSDPVVQR DIKSLPFAVT  180
EGPDGYPLIH ARYLGESRTF TPTQVLGMLF SDLKIIAEKN LNAAVVDCCI GIPVYFTDLQ  240
RRAVLDAATI AGLHPLRLFH ETTATALAYG IYKTDLPEND QLNVAFVDIG HASMQVCIAG  300
FKKGQLKILA HSFDQSLGGR DFDEVLFHHF AAKFKEEYKI DVFQNARACL RLRVACEKLK  360
KMLSANPEAP LNIECLMEEK DVRGFIKRDE FEQISVPILE RVKGPLEKAL LDAQLSIENI  420
HTVEVVGSGS RVPAIIKILT DFFKKEPRRT MNASECVARG CALQCAILSP TFKVREFQVN  480
ESFPFSIALS WKGSGPDTQN GAADNNQSTI VFPKGNPIPS IKALTFYRSG TFSVDVQYAD  540
VSDLQAPAKI STYTIGPFQS TKGERAKLKV KARLNLHGIV SVDSATLLEE EEIEVPVTKE  600
QPKEGAKMET DEAPSDAAPP SSNETDVNMQ DAKGTADASG AENGVPESGD KPVQMETDTK  660
ADAPKRKVKK TNIPVVELVY GGMPPSDVQK AIEKEFEMAL QDRVMEETKD KKNAVEAYVY  720
DTRNKLSDKY QEFVTEPERE AFIARLQEVE DWLYEDGEDE TKGVYIAKLE ELKKQGDPIE  780
ERYKEHTERG TVIDQLGYCI NSYREAAMST DAKFEHIDNS DKQKVLNECV EAEAWLREKK  840
QQQDSLPKYA NPVLLSADVR RKAEALDRFC RPIMTKPKPA PVKPAAPETP TPPPQGNEHQ  900
PQGGDANANA GSNENPADGS NEVPLASEEP METDKPEAPQ SSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-17	LBD family protein