PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1037400.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 590aa    MW: 66092 Da    PI: 8.6708
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1037400.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.24.2e-25104205199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+ltpsd+++ g +++p+ +a+++        +++ +  tl+++d++g +W++++iyr++++r++lt+GW++Fv+ + L +gD++vF+  
  Pd.00g1037400.m01 104 FAKILTPSDANNGGGFSVPRFCADSIfpalnyqAEPPVQ--TLSVTDLHGVVWDFRHIYRGTPRRHLLTTGWSKFVNHKMLVAGDSIVFM-- 191
                        89*********************999****985444444..9************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++s++e++v+v+r+
  Pd.00g1037400.m01 192 RNSRGEMFVGVRRA 205
                        669999*****996 PP
2Auxin_resp547.4e-192443002883
         Auxin_resp  28 vekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        +e vekal+v +s+GmR+km++etedss+ ++ +Gt ++vs  d+  W++S+Wr+L+
  Pd.00g1037400.m01 244 AEVVEKALNVFWSAGMRVKMSVETEDSSRMTWfQGTLSSVSIPDNGPWQRSPWRMLQ 300
                        67899**************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    
MPPTPHPPSH HHPHSHSYSP HRPIDPKIWR ACAGNSVQIP ILHSRPLILC RISAVHFLAD  60
PTTDEVFAKL LLLPIPNYEP TNRHEPPNDD VFDDADETDK VVSFAKILTP SDANNGGGFS  120
VPRFCADSIF PALNYQAEPP VQTLSVTDLH GVVWDFRHIY RGTPRRHLLT TGWSKFVNHK  180
MLVAGDSIVF MRNSRGEMFV GVRRAVRSTV SSDCASRWSS HISGGATTTM RLKTEDQEGS  240
GRKAEVVEKA LNVFWSAGMR VKMSVETEDS SRMTWFQGTL SSVSIPDNGP WQRSPWRMLQ  300
VTWDEPEVLQ NAKRVSPWQV DYVASTPSIH TAFPPAKRFR APMTPRDSVP PTNAKEDRTR  360
SNVEASESGA DQHHLPRLRT LLKVYKEAIF NGDEETVSEV EAKIEILENE KNKLVKKVSS  420
SSAEITSGKE KFIRLQADFD NCRKRFEKER LTVRTDAQEE VIESLLPMVD NFERAKQYIK  480
PETDKEKKID ASYQGIYKQL VETMKSLHVA VVPTVGKSFD PSLHEAVARE ESQEFKEGII  540
IQEIRRGFLL GGRLLRPAMV KVSTGPGSKK APVATEKSSG LPATAAGVEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-121ARF family protein