PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1028870.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Nin-like
Protein Properties Length: 243aa    MW: 28223.1 Da    PI: 5.9772
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1028870.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.93.5e-27133182352
             RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        + ++l++++kyF+lpi++AAk+L+v+lTvLKr+CR+++I+RWPhRkiksl
  Pd.00g1028870.m01 133 AALELDEIQKYFDLPITQAAKKLNVGLTVLKRRCRELNIMRWPHRKIKSL 182
                        6899********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MDSIQLQVPK IEINPHGFDS LQYYQDPFHE NVSLEEHLQL DNLLEFNSIP LEWNQNQHSH  60
MGFQGFEDLG SWDFMLDNTD FTSPCDYVVV DEKPVTTVVD SFDYSNNPTS VLDEASRMAD  120
WGSNGIYNKK KSAALELDEI QKYFDLPITQ AAKKLNVGLT VLKRRCRELN IMRWPHRKIK  180
SLKALIENVK GLGLTNELKM LEEQKRLLEQ LPDMELTERA KKLRQASFKA NYKMKRSLTT  240
ARP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.16e-42Nin-like family protein