PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1004500.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 345aa MW: 39365.3 Da PI: 6.7872

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1004500.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.8	2.6e-27	223	308	1	86
trihelix 1 rWtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+ Li++r +e+++r +g++k+p Wee+s m + g++rs+ +Ckekwen+nk++k+ ++kkr s + +tcpyf++le Pd.00g1004500.m01 223 RWPEAEVQSLITLRAALEHKFRiAGNSKGPIWEEISLGMCDMGYNRSARKCKEKWENINKYFKRSMGTDKKR-SANAKTCPYFHELE 308 8*******************559******************************************8.67778*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MEALTADRHI PNTAAFPEQI APFPESTDQH LLFANPTAVV HSPPQKLRPI RCSSGRCPAI 60 ELPDSAGNLG DGGPAHVGSG TWGDEGEDES SSSPDDDGNE YLKTEGTERK KRKRKRRSRT 120 GGRLERVEIF LESLVMKVME KQEQMHKQLI EMIEKREKER IAREEAWKQQ ELDRMKRDEE 180 IRAQETSLVP NYDHRCMDEN GGADNGIQRD MMVMIKCDQT NRRWPEAEVQ SLITLRAALE 240 HKFRIAGNSK GPIWEEISLG MCDMGYNRSA RKCKEKWENI NKYFKRSMGT DKKRSANAKT 300 CPYFHELELL HKSGLISTED GFKCTSNQNE AKIEKQDNGE KGVTE

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MEALTADRHI PNTAAFPEQI APFPESTDQH LLFANPTAVV HSPPQKLRPI RCSSGRCPAI  60
ELPDSAGNLG DGGPAHVGSG TWGDEGEDES SSSPDDDGNE YLKTEGTERK KRKRKRRSRT  120
GGRLERVEIF LESLVMKVME KQEQMHKQLI EMIEKREKER IAREEAWKQQ ELDRMKRDEE  180
IRAQETSLVP NYDHRCMDEN GGADNGIQRD MMVMIKCDQT NRRWPEAEVQ SLITLRAALE  240
HKFRIAGNSK GPIWEEISLG MCDMGYNRSA RKCKEKWENI NKYFKRSMGT DKKRSANAKT  300
CPYFHELELL HKSGLISTED GFKCTSNQNE AKIEKQDNGE KGVTE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	114	RKKRKR
2	109	115	RKKRKRK
3	109	117	RKKRKRKRR
4	110	115	KKRKRK
5	110	116	RKKRKRK
6	111	117	RKKRKRK
7	112	117	RKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-32	Trihelix family protein