PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g100020.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 613aa MW: 67306.2 Da PI: 5.7084

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g100020.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20	1.3e-06	190	210	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Pd.00g100020.m01 190 PCPEFRK-GACRQGDACEYAHG 210 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MRYSFSILLE LSASDDLDGF KRAVEEEGHD VDEASYWYGR LIGSKKMGFE ERTPLMIAAM 60 FGDLIAPAYS STFNSRKKAL EVMLKGVPSI DEPFDFSEQM VYETEGQEQQ EITTPRASKD 120 GTEKKEYPID LSLPDIKNGI YSTDEFRMYT FKIKPCSRAY SHDWTECPFV HPGENARRRD 180 PRKYHYSCVP CPEFRKGACR QGDACEYAHG IFECWLHPAQ YRTRICKDET GCTRRVCFFA 240 HKPEELRPLY ASTGSAVPSP RSFSANASSL DMGSISPLSL NSPSMLIPPA STPPMTPSGA 300 SSPRSGNMWQ NQPNIAPPTL QLPGSRLKST LSARDMDLDI ELLSLESHRR RQQRLIDEIS 360 GSPSSWNTGL SSPSAFAASG NRTGELNRIG GVNPTNLDDI FGSLDPAILP QYNGPASQLH 420 SPTGIQMRQN MNLQPRPSYS ASLSSSPVRA SPLFGADASS AAAVFSSRSA AFAKRSQSFI 480 ERSAGNRNPG FSSPADSGTL MPSNVSDWGS PGGKLDWGMQ GEELNKLRKS ASFGFRSSGS 540 SFSNAPTMMP GAADEPDVSW VQSLVKDAPP PSQLGQFGFE DQQQPQCHPN NGGPEMLPAW 600 VEQLYLEQEQ MVA

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MRYSFSILLE LSASDDLDGF KRAVEEEGHD VDEASYWYGR LIGSKKMGFE ERTPLMIAAM  60
FGDLIAPAYS STFNSRKKAL EVMLKGVPSI DEPFDFSEQM VYETEGQEQQ EITTPRASKD  120
GTEKKEYPID LSLPDIKNGI YSTDEFRMYT FKIKPCSRAY SHDWTECPFV HPGENARRRD  180
PRKYHYSCVP CPEFRKGACR QGDACEYAHG IFECWLHPAQ YRTRICKDET GCTRRVCFFA  240
HKPEELRPLY ASTGSAVPSP RSFSANASSL DMGSISPLSL NSPSMLIPPA STPPMTPSGA  300
SSPRSGNMWQ NQPNIAPPTL QLPGSRLKST LSARDMDLDI ELLSLESHRR RQQRLIDEIS  360
GSPSSWNTGL SSPSAFAASG NRTGELNRIG GVNPTNLDDI FGSLDPAILP QYNGPASQLH  420
SPTGIQMRQN MNLQPRPSYS ASLSSSPVRA SPLFGADASS AAAVFSSRSA AFAKRSQSFI  480
ERSAGNRNPG FSSPADSGTL MPSNVSDWGS PGGKLDWGMQ GEELNKLRKS ASFGFRSSGS  540
SFSNAPTMMP GAADEPDVSW VQSLVKDAPP PSQLGQFGFE DQQQPQCHPN NGGPEMLPAW  600
VEQLYLEQEQ MVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-141	C3H family protein