PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g090270.m02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 818aa MW: 90932.1 Da PI: 5.5096 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68 | 1.2e-21 | 98 | 153 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF+++++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k Pd.00g090270.m02 98 KKRYHRHTAHQIQEMENLFKECPHPDDKQRQKLSQELGLKPRQVKFWFQNRRTQMK 153 688999***********************************************998 PP | |||||||
2 | START | 162.9 | 2.3e-51 | 300 | 527 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla.. 77 la + +elvk+ +a+ep+W + s e +n +e+++ f++ +++ea r+s+vv+m++ +lv +ld + +W e ++ Pd.00g090270.m02 300 LAASSVDELVKMCQAGEPLWIRNSeigkEVLNVKEYTRMFPP--WplnlkhhssdqFRTEATRDSAVVIMNSINLVDCFLDAN-KWMELFPsi 389 6788899*****************666666666666666655..15699999***99**************************.********* PP ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 +a+t++vi+ + g lqlm+aelq+lsplvp R+ f+Ry++q ++g w+ivd +ds ++ +ss+ R ++lpSg+li++++ng Pd.00g090270.m02 390 vsRAKTVQVIQADpsgqanGSLQLMYAELQVLSPLVPtREAHFLRYCQQnAEEGCWAIVDFPIDSFHDNL-QSSFPRYKRLPSGCLIQDMPNG 481 *************************************************999****************98.9********************* PP EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +sk+twveh++ +++ +h++l + v sg+a+ga++w+a lqrqce+ Pd.00g090270.m02 482 YSKITWVEHAEIEEKPVHQILSHYVYSGMAFGAQRWLAILQRQCER 527 ********************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 818 aa Download sequence |
MLEAKMYGDC QVMSTMGGGN VVTSETLFSS PIQNPNFNFM PSQLPFQPFS SIINPKEENG 60 LLMRGKEEMM ESGSGSEQVE EKSGNEQEAD QLQQPPKKKR YHRHTAHQIQ EMENLFKECP 120 HPDDKQRQKL SQELGLKPRQ VKFWFQNRRT QMKAQQDRSD NVMLRAENDS LKNENYRLQT 180 ALRNIICPNC GGPSMIADIG LDEQQLRLEN ARLREELERV CCLSSRYTTG RQIQTMAPGD 240 PLMSASSLDL DMNIYSRHFQ DPMTSCGDMI PMPLLPPEMP SNYNEGGVLL DEEKSLAVEL 300 AASSVDELVK MCQAGEPLWI RNSEIGKEVL NVKEYTRMFP PWPLNLKHHS SDQFRTEATR 360 DSAVVIMNSI NLVDCFLDAN KWMELFPSIV SRAKTVQVIQ ADPSGQANGS LQLMYAELQV 420 LSPLVPTREA HFLRYCQQNA EEGCWAIVDF PIDSFHDNLQ SSFPRYKRLP SGCLIQDMPN 480 GYSKITWVEH AEIEEKPVHQ ILSHYVYSGM AFGAQRWLAI LQRQCERVAS LMARNISDLG 540 VIPSPEARKN LMKLSQRMIR TFCVNMSTSN GQSWTALSDS PDDTVRITTR KVTDPGQPIG 600 VILSAVSTTW LPYSHYRVFE LLRDEHRRAQ LDVLSNGNSL HEVAHIANGS HPGNCISLLR 660 INVASNSAQN VELMLQESCT DESGSLVVYT TMDVDGIQLA MSGEDPSCIP LLPLGFVIVP 720 LHPMESTGPT PNHLTSSSPD HRCLLTVGLQ VLASTSPSAK LNLSSVTAIN NHLCNSVQQI 780 ISALSGGSDT CIAAATTENG SVGGGASCSD PTASSPRQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | HD-ZIP family protein |